RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 P2RX5Q93086 422 aa5.96□□□□□ -1.45
VPS13C-209ENST00000560637 CCDC42Q96M95 316 aa5.96□□□□□ -1.45
VPS13C-209ENST00000560637 TUBGCP2Q9BSJ2 902 aa5.96□□□□□ -1.45
VPS13C-209ENST00000560637 DESI2Q9BSY9 194 aa5.96□□□□□ -1.45
VPS13C-209ENST00000560637 IKZF4Q9H2S9 585 aa5.96□□□□□ -1.45
VPS13C-209ENST00000560637 SMARCAD1Q9H4L7 1026 aa5.96□□□□□ -1.45
VPS13C-209ENST00000560637 LAMB4A4D0S4 1761 aa5.96□□□□□ -1.45
VPS13C-209ENST00000560637 KIF13BQ9NQT8 1826 aa5.96□□□□□ -1.45
VPS13C-209ENST00000560637 ATRNL1Q5VV63 1379 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 SYNJ2BP-COX16A0A087WUM0 186 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 ZMYND10O75800 440 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 MRPS9P82933 396 aaKnown RBP5.96□□□□□ -1.46
VPS13C-209ENST00000560637 EMC2Q15006 297 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 TMEM63BQ5T3F8 832 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 RNF180Q86T96 592 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 VSIG10LQ86VR7 867 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 CEP57Q86XR8 500 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 RASAL3Q86YV0 1011 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 GLIS3Q8NEA6 775 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 MNS1Q8NEH6 495 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 CTNNBL1Q8WYA6 563 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-209ENST00000560637 ABHD16BQ9H3Z7 469 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 AGO4Q9HCK5 861 aaKnown RBP5.96□□□□□ -1.46
VPS13C-209ENST00000560637 STARD7Q9NQZ5 370 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 ERAP1Q9NZ08 941 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 COX16Q9P0S2 106 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 GUCA1BQ9UMX6 200 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-209ENST00000560637 TISP43B9A030 160 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 STRNO43815 780 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 TLR2O60603 784 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 FKTNO75072 461 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 SNHG28P0DPA3 235 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 SMARCA1P28370 1054 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 CCL23P55773 120 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 MAP2K5Q13163 448 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 PLCB4Q15147 1175 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 PPP2R5AQ15172 486 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 FAM110CQ1W6H9 321 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 DNAJB3Q8WWF6 145 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 HAS1Q92839 578 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 ACCSQ96QU6 501 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 CTAGE1Q96RT6 745 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 HMX1Q9NP08 348 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-209ENST00000560637 MYH2Q9UKX2 1941 aa5.96□□□□□ -1.46
VPS13C-209ENST00000560637 SOWAHBA6NEL2 793 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 URI1O94763 535 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 ZBTB48P10074 688 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 GHRP10912 638 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 RPA1P27694 616 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 INHBEP58166 350 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 ITGB3BPQ13352 177 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 LAMC2Q13753 1193 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 ARID5BQ14865 1188 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF658Q5TYW1 1059 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 PCNX4Q63HM2 1172 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 GIMAP8Q8ND71 665 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 MCPH1Q8NEM0 835 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 PRPF31Q8WWY3 499 aaKnown RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 TUBE1Q9UJT0 475 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 GABRQQ9UN88 632 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 POLIQ9UNA4 740 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 UBR3Q6ZT12 1888 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 A0A087WZ62 844 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 EYA4O95677 639 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 OATP04181 439 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 PIK3CAP42336 1068 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 CASP4P49662 377 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 FKBP3Q00688 224 aaKnown RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 KCNA1Q09470 495 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 TRIM32Q13049 653 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 UGCGQ16739 394 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 UNC13DQ70J99 1090 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF354CQ86Y25 554 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 CCDC155Q8N6L0 562 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 GPRASP2Q96D09 838 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 CPB2Q96IY4 423 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 FDXACB1Q9BRP7 624 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 PLEKHA4Q9H4M7 779 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 MYO1AQ9UBC5 1043 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 A0A0U1RQG5 324 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 ESPNB1AK53 854 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 CA12O43570 354 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 SUPT20HL2P0C7V6 817 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 GNG11P61952 73 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 FSCN1Q16658 493 aaKnown RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 SPATA1Q5VX52 437 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 KIAA1841Q6NSI8 718 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 RINT1Q6NUQ1 792 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 METTL7BQ6UX53 244 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 OTOP1Q7RTM1 612 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 HASPINQ8TF76 798 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 CLEC4DQ8WXI8 215 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 SHISA4Q96DD7 197 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 RIT2Q99578 217 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 PTPN18Q99952 460 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 JPH2Q9BR39 696 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 PRG3Q9Y2Y8 225 aaPredicted RBP5.95□□□□□ -1.46
VPS13C-209ENST00000560637 ROBO3Q96MS0 1386 aa5.95□□□□□ -1.46
VPS13C-209ENST00000560637 GPR25O00155 361 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms