RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 KIF19Q2TAC6 998 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 XXYLT1Q8NBI6 393 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 GRAMD1AQ96CP6 724 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 LRRC37BQ96QE4 947 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 MAGEB5Q9BZ81 275 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 ING2Q9H160 280 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 NDE1Q9NXR1 346 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 ZFP69BQ9UJL9 534 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 CFAP73A6NFT4 308 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 CHRNA3P32297 505 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 PPP2R2AP63151 447 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 ARHGAP18Q8N392 663 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 TEKT2Q9UIF3 430 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 LRFN2Q9ULH4 789 aa14.12□□□□□ -0.15
CSPG4P11-201ENST00000560634 ZNF18P17022 549 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 RC3H1Q5TC82 1133 aaKnown RBP14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 ANO5Q75V66 913 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 CAPN11Q9UMQ6 739 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 YEATS2Q9ULM3 1422 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 ARHGAP10A1A4S6 786 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 DYNC1I2Q13409 638 aaKnown RBP14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 LMCD1Q9NZU5 365 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 WARS2Q9UGM6 360 aaKnown RBP14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 MLH3Q9UHC1 1453 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 WDR19Q8NEZ3 1342 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 ATP10AO60312 1499 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 E2F6O75461 281 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 SLC4A1P02730 911 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 GRAMD4Q6IC98 578 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 ZBTB33Q86T24 672 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 GDAQ9Y2T3 454 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 HNRNPCL2B2RXH8 293 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 HNRNPCL1O60812 293 aaKnown RBP14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 SMARCA1P28370 1054 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 EDEM3Q9BZQ6 932 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 MAGED2Q9UNF1 606 aaPredicted RBP14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 ZBTB1Q9Y2K1 713 aa14.11□□□□□ -0.15
CSPG4P11-201ENST00000560634 CEP170Q5SW79 1584 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 CREB3O43889 395 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 LARGE1O95461 756 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 SYF2O95926 243 aaKnown RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 COPS2P61201 443 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 C1orf146Q5VVC0 180 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 TOGARAM2Q6ZUX3 1019 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 FAM47EQ6ZV65 393 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 TEX12Q9BXU0 123 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 SLITRK6Q9H5Y7 841 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 ZWILCHQ9H900 591 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 DNAJC17Q9NVM6 304 aaKnown RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 KLHL8Q9P2G9 620 aaPredicted RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 ZNF189O75820 626 aaPredicted RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 SERPINB2P05120 415 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 PMS2P54278 862 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 NLRP10Q86W26 655 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 TTC39CQ8N584 583 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 HIPK4Q8NE63 616 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 FAM167AQ96KS9 214 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 CLRN2A0PK11 232 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 SYCE1LA8MT33 242 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 GDF11O95390 407 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 MAGOHP61326 146 aaKnown RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 AP2B1P63010 937 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 MKRN3Q13064 507 aaKnown RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 DNMT1P26358 1616 aaKnown RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 MAN1A2O60476 641 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 PEX3P56589 373 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 TBC1D10BQ4KMP7 808 aaPredicted RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 FAM20AQ96MK3 541 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 STRBPQ96SI9 672 aaKnown RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 GCOM2Q9BZD3 368 aaPredicted RBP14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 KIF9Q9HAQ2 790 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 PBRM1Q86U86 1689 aa14.1□□□□□ -0.15
CSPG4P11-201ENST00000560634 NR3C1P04150 777 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 USP17L8P0C7I0 530 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 BRAFP15056 766 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 NPR1P16066 1061 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 CDK8P49336 464 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 ARFIP2P53365 341 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 UBE2SQ16763 222 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 CEP70Q8NHQ1 597 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 CDC26Q8NHZ8 85 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 AIFM3Q96NN9 605 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 SEL1LQ9UBV2 794 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 FNDC3AQ9Y2H6 1198 aaKnown RBP14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 RNF103-CHMP3A0A140T963 221 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 H0Y3Z8 333 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 H3BRJ5 948 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 GGCXP38435 758 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 TNFAIP2Q03169 654 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 TMEM259Q4ZIN3 620 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 PPP6R3Q5H9R7 873 aaPredicted RBP14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 DSTYKQ6XUX3 929 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 TMEM179Q6ZVK1 233 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 TRIM59Q8IWR1 403 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 OR9Q1Q8NGQ5 310 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 NCLNQ969V3 563 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 OLFM3Q96PB7 478 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 ZC4H2Q9NQZ6 224 aa14.09□□□□□ -0.15
CSPG4P11-201ENST00000560634 ZNF212Q9UDV6 495 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms