RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 SEPT7Q16181 437 aaKnown RBP5.32□□□□□ -1.56
VPS13C-207ENST00000558919 ZNF568Q3ZCX4 644 aa5.32□□□□□ -1.56
VPS13C-207ENST00000558919 TRIM68Q6AZZ1 485 aa5.32□□□□□ -1.56
VPS13C-207ENST00000558919 GLB1LQ6UWU2 654 aa5.32□□□□□ -1.56
VPS13C-207ENST00000558919 SMC1BQ8NDV3 1235 aa5.32□□□□□ -1.56
VPS13C-207ENST00000558919 OR2W6PQ8NHA6 318 aa5.32□□□□□ -1.56
VPS13C-207ENST00000558919 CHTF18Q8WVB6 975 aa5.32□□□□□ -1.56
VPS13C-207ENST00000558919 SAMD11Q96NU1 681 aa5.32□□□□□ -1.56
VPS13C-207ENST00000558919 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS13C-207ENST00000558919 JADE2Q9NQC1 790 aa5.32□□□□□ -1.56
VPS13C-207ENST00000558919 TOMM22Q9NS69 142 aa5.32□□□□□ -1.56
VPS13C-207ENST00000558919 H2AFY2Q9P0M6 372 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-207ENST00000558919 CLSTN1O94985 981 aa5.31□□□□□ -1.56
VPS13C-207ENST00000558919 KPNA1P52294 538 aaPredicted RBP5.31□□□□□ -1.56
VPS13C-207ENST00000558919 EFEMP1Q12805 493 aa5.31□□□□□ -1.56
VPS13C-207ENST00000558919 LRRC32Q14392 662 aa5.31□□□□□ -1.56
VPS13C-207ENST00000558919 SLFN12LQ6IEE8 588 aa5.31□□□□□ -1.56
VPS13C-207ENST00000558919 ESRP1Q6NXG1 681 aaKnown RBP5.31□□□□□ -1.56
VPS13C-207ENST00000558919 PHYKPLQ8IUZ5 450 aa5.31□□□□□ -1.56
VPS13C-207ENST00000558919 TTC9BQ8N6N2 239 aa5.31□□□□□ -1.56
VPS13C-207ENST00000558919 TUBGCP5Q96RT8 1024 aa5.31□□□□□ -1.56
VPS13C-207ENST00000558919 THG1LQ9NWX6 298 aaKnown RBP5.31□□□□□ -1.56
VPS13C-207ENST00000558919 CDC42EP3Q9UKI2 254 aa5.31□□□□□ -1.56
VPS13C-207ENST00000558919 PTPN22Q9Y2R2 807 aa5.31□□□□□ -1.56
VPS13C-207ENST00000558919 CD40P25942 277 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 LSSP48449 732 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 RGS3P49796 1198 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 MEOX1P50221 254 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 RRADP55042 308 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 BCAR1P56945 870 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 SMAD3P84022 425 aaKnown RBP5.3□□□□□ -1.56
VPS13C-207ENST00000558919 NFYCQ13952 458 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 PCOLCEQ15113 449 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 SPATS1Q496A3 300 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 GPR158Q5T848 1215 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 USP30Q70CQ3 517 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 LARP4Q71RC2 724 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS13C-207ENST00000558919 LIMS2Q7Z4I7 341 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 THNSL2Q86YJ6 484 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 BCL6BQ8N143 479 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-207ENST00000558919 RPGRQ92834 1020 aaKnown RBP5.3□□□□□ -1.56
VPS13C-207ENST00000558919 MEGF9Q9H1U4 602 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 VWA7Q9Y334 891 aa5.3□□□□□ -1.56
VPS13C-207ENST00000558919 ARHGAP6O43182 974 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 TGM5O43548 720 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 IGSF3O75054 1194 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 FKBP9O95302 570 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 SESN2P58004 480 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-207ENST00000558919 RAC3P60763 192 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 PHC1P78364 1004 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 MYBPC3Q14896 1274 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 DHCR24Q15392 516 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 DGKDQ16760 1214 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 RNF151Q2KHN1 245 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 AGBL4Q5VU57 503 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 PRAMEF9Q5VWM5 478 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 TIGD7Q6NT04 549 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-207ENST00000558919 FKBP9P1Q75LS8 142 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 KANSL1Q7Z3B3 1105 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 FILIP1Q7Z7B0 1213 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 RNF180Q86T96 592 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 CIR1Q86X95 450 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-207ENST00000558919 RTKN2Q8IZC4 609 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 C7orf31Q8N865 590 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 LEO1Q8WVC0 666 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-207ENST00000558919 GPR101Q96P66 508 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-207ENST00000558919 LMF1Q96S06 567 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 PTPN18Q99952 460 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 OR10A2Q9H208 303 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 ZMAT4Q9H898 229 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 MSL2Q9HCI7 577 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 KCMF1Q9P0J7 381 aa5.29□□□□□ -1.56
VPS13C-207ENST00000558919 USP36Q9P275 1121 aaKnown RBP5.29□□□□□ -1.56
VPS13C-207ENST00000558919 SAE1Q9UBE0 346 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-207ENST00000558919 MAFGO15525 162 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 GPR42O15529 346 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 LSP1P33241 339 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 BUD31P41223 144 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-207ENST00000558919 ADCYAP1R1P41586 468 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 MAGEA10P43363 369 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-207ENST00000558919 MRE11P49959 708 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 STAT5BP51692 787 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 IL2P60568 153 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 NOLC1Q14978 699 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS13C-207ENST00000558919 DDX46Q7L014 1031 aaKnown RBP5.28□□□□□ -1.56
VPS13C-207ENST00000558919 BMP8AQ7Z5Y6 402 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 PRRT2Q7Z6L0 340 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-207ENST00000558919 C11orf74Q86VG3 221 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 OR5AN1Q8NGI8 311 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 RTF1Q92541 710 aaKnown RBP5.28□□□□□ -1.56
VPS13C-207ENST00000558919 LPPQ93052 612 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 NEIL1Q96FI4 390 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-207ENST00000558919 LOXL4Q96JB6 756 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 KIAA1683Q9H0B3 1180 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 SPTLC3Q9NUV7 552 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 SMPD4Q9NXE4 827 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 NR2E1Q9Y466 385 aa5.28□□□□□ -1.56
VPS13C-207ENST00000558919 PRPF6O94906 941 aaKnown RBP5.27□□□□□ -1.57
VPS13C-207ENST00000558919 BPIP17213 487 aa5.27□□□□□ -1.57
VPS13C-207ENST00000558919 STAT3P40763 770 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms