RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 CCDC85CA6NKD9 419 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 H2AFYO75367 372 aaKnown RBP4.26□□□□□ -1.73
VPS13C-205ENST00000558088 CRTAMO95727 393 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 MPIG6BO95866 241 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 RASGRF1Q13972 1273 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 RRP1BQ14684 758 aaKnown RBP4.26□□□□□ -1.73
VPS13C-205ENST00000558088 FAM209AQ5JX71 171 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 FNDC7Q5VTL7 733 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 SPATC1Q76KD6 591 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 GSPT2Q8IYD1 628 aaKnown RBP4.26□□□□□ -1.73
VPS13C-205ENST00000558088 ASB15Q8WXK1 588 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 RABGGTAQ92696 567 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 GCDHQ92947 438 aaPredicted RBP4.26□□□□□ -1.73
VPS13C-205ENST00000558088 CEP72Q9P209 647 aa4.26□□□□□ -1.73
VPS13C-205ENST00000558088 GOLGA8BA8MQT2 603 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 ADCY3O60266 1144 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 EFCAB14O75071 495 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 ZC3H6P61129 1189 aaKnown RBP4.25□□□□□ -1.73
VPS13C-205ENST00000558088 TMEM132BQ14DG7 1078 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 KLHDC10Q6PID8 442 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 GFM2Q969S9 779 aaKnown RBP4.25□□□□□ -1.73
VPS13C-205ENST00000558088 E2F7Q96AV8 911 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 MIEF2Q96C03 454 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 SLC7A6OSQ96CW6 309 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-205ENST00000558088 DHRS4Q9BTZ2 278 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 SLC2A4RGQ9NR83 387 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 NDOR1Q9UHB4 597 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 DMRT1Q9Y5R6 373 aa4.25□□□□□ -1.73
VPS13C-205ENST00000558088 SLC12A8A0AV02 714 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 MAFO75444 373 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-205ENST00000558088 C6orf222P0C671 652 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-205ENST00000558088 PTGS2P35354 604 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 MAN2A2P49641 1150 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 ADAM15Q13444 863 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 LONRF2Q1L5Z9 754 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 ZC3H12BQ5HYM0 836 aaKnown RBP4.24□□□□□ -1.73
VPS13C-205ENST00000558088 NOSTRINQ8IVI9 506 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 ERCC4Q92889 916 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-205ENST00000558088 MAGEB10Q96LZ2 347 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-205ENST00000558088 TTPALQ9BTX7 342 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 CELF4Q9BZC1 486 aaKnown RBP4.24□□□□□ -1.73
VPS13C-205ENST00000558088 SLC6A15Q9H2J7 730 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 SAE1Q9UBE0 346 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-205ENST00000558088 MSRB2Q9Y3D2 182 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 MRPS23Q9Y3D9 190 aaKnown RBP4.24□□□□□ -1.73
VPS13C-205ENST00000558088 SH3BP1Q9Y3L3 701 aa4.24□□□□□ -1.73
VPS13C-205ENST00000558088 CTDP1Q9Y5B0 961 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-205ENST00000558088 TGM1P22735 817 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 SMAD3P84022 425 aaKnown RBP4.23□□□□□ -1.73
VPS13C-205ENST00000558088 ATP2C1P98194 919 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-205ENST00000558088 SEC23AQ15436 765 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 KRTAP15-1Q3LI76 137 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 NBPF6Q5VWK0 638 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 SPTY2D1Q68D10 685 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-205ENST00000558088 ULK2Q8IYT8 1036 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 NBPF4Q96M43 638 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 CCDC113Q9H0I3 377 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 NRDE2Q9H7Z3 1164 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 AGO3Q9H9G7 860 aaKnown RBP4.23□□□□□ -1.73
VPS13C-205ENST00000558088 COQ6Q9Y2Z9 468 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 B3GALT1Q9Y5Z6 326 aa4.23□□□□□ -1.73
VPS13C-205ENST00000558088 GOLGA6L22H0YM25 854 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 TRAF5O00463 557 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 SDHAP31040 664 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 BPIFB4P59827 614 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 ROM1Q03395 351 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 ELAVL1Q15717 326 aaKnown RBP4.22□□□□□ -1.73
VPS13C-205ENST00000558088 FOXB2Q5VYV0 432 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 KRT40Q6A162 431 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 LAIR1Q6GTX8 287 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 DPY19L2P1Q6NXN4 242 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 GAREM2Q75VX8 874 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 ZNF627Q7L945 461 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 HOMEZQ8IX15 550 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 SYNE4Q8N205 404 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 C2orf69Q8N8R5 385 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 EXOC2Q96KP1 924 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 RPL10LQ96L21 214 aaKnown RBP4.22□□□□□ -1.73
VPS13C-205ENST00000558088 AGAP2Q99490 1192 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 FOXB1Q99853 325 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 GPR87Q9BY21 358 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 RCAN3Q9UKA8 241 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 DENND2AQ9ULE3 1009 aa4.22□□□□□ -1.73
VPS13C-205ENST00000558088 RBM8AQ9Y5S9 174 aaKnown RBP4.22□□□□□ -1.73
VPS13C-205ENST00000558088 KDM2BQ8NHM5 1336 aa4.21□□□□□ -1.73
VPS13C-205ENST00000558088 FOXN1O15353 648 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 DIAPH1O60610 1272 aaKnown RBP4.21□□□□□ -1.74
VPS13C-205ENST00000558088 PPFIA4O75335 1185 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 RHOBTB3O94955 611 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 NPTXRO95502 500 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 FAM153BP0C7A2 387 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 STAT3P40763 770 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 SCNN1GP51170 649 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 ADCY7P51828 1080 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 IRF9Q00978 393 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 ALDH6A1Q02252 535 aaKnown RBP4.21□□□□□ -1.74
VPS13C-205ENST00000558088 FSTL1Q12841 308 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 TCIRG1Q13488 830 aa4.21□□□□□ -1.74
VPS13C-205ENST00000558088 SAFB2Q14151 953 aaKnown RBP eCLIP4.21□□□□□ -1.74
VPS13C-205ENST00000558088 DGKDQ16760 1214 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms