RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RINT1Q6NUQ1 792 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 EFCAB12Q6NXP0 572 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 CCDC73Q6ZRK6 1079 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 SH3RF1Q7Z6J0 888 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 KIAA0319LQ8IZA0 1049 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 SYT2Q8N9I0 419 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-227ENST00000557269 TOX2Q96NM4 488 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 GBP4Q96PP9 640 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 MTRQ99707 1265 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 SEZ6LQ9BYH1 1024 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 FAM49AQ9H0Q0 323 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-227ENST00000557269 SUGCTQ9HAC7 445 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 SERTAD1Q9UHV2 236 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 PCDHA2Q9Y5H9 948 aa14.28□□□□□ -0.12
SHMT2-227ENST00000557269 DCDC2CA8MYV0 355 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 ACTN4O43707 911 aaKnown RBP14.27□□□□□ -0.13
SHMT2-227ENST00000557269 RFC5P40937 340 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 CLCN3P51790 818 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 POLGP54098 1239 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-227ENST00000557269 PTK7Q13308 1070 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 SNW1Q13573 536 aaKnown RBP14.27□□□□□ -0.13
SHMT2-227ENST00000557269 EMC2Q15006 297 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 LONRF3Q496Y0 759 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 C1orf186Q6ZWK4 172 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 MAEAQ7L5Y9 396 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 FMR1NBQ8N0W7 255 aaPredicted RBP14.27□□□□□ -0.13
SHMT2-227ENST00000557269 KCTD17Q8N5Z5 321 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 METTL13Q8N6R0 699 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 ENGASEQ8NFI3 743 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 DNAJB3Q8WWF6 145 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 LARP4BQ92615 738 aaKnown RBP14.27□□□□□ -0.13
SHMT2-227ENST00000557269 STAMQ92783 540 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 TMEM143Q96AN5 459 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 GPRC5CQ9NQ84 441 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 STK17AQ9UEE5 414 aa14.27□□□□□ -0.13
SHMT2-227ENST00000557269 UMODL1Q5DID0 1318 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 MROH7Q68CQ1 1323 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 MKI67P46013 3256 aaKnown RBP14.26□□□□□ -0.13
SHMT2-227ENST00000557269 SMIM35A0A1B0GVV1 85 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 TRIM43BA6NCK2 446 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 MYMKA6NI61 221 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 MAGEB2O15479 319 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 DGAT1O75907 488 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 ZNF202O95125 648 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 CYP11B2P19099 503 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 ITGB8P26012 769 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 SYKP43405 635 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 UBE2HP62256 183 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 RAD51AP2Q09MP3 1159 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 TMEM62Q0P6H9 643 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 GPBP1Q86WP2 473 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 GRAMD1CQ8IYS0 662 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 IQUBQ8NA54 791 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 SLC7A3Q8WY07 619 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 TRIM43Q96BQ3 446 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-227ENST00000557269 CCDC43Q96MW1 224 aaKnown RBP14.26□□□□□ -0.13
SHMT2-227ENST00000557269 OSBPL7Q9BZF2 842 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 TBX21Q9UL17 535 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 NOD1Q9Y239 953 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 PPME1Q9Y570 386 aa14.26□□□□□ -0.13
SHMT2-227ENST00000557269 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-227ENST00000557269 TLR3O15455 904 aaKnown RBP14.25□□□□□ -0.13
SHMT2-227ENST00000557269 NR1I2O75469 434 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 VTNP04004 478 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 CLTBP09497 229 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 CASP1P29466 404 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 CACNB1Q02641 598 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-227ENST00000557269 MAPK7Q13164 816 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 TRAF7Q6Q0C0 670 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 KSR1Q8IVT5 923 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 C7orf61Q8IZ16 206 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 DAW1Q8N136 415 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 ASAP3Q8TDY4 903 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 ZNF668Q96K58 619 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-227ENST00000557269 PPP1R16BQ96T49 567 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 NOC4LQ9BVI4 516 aaKnown RBP14.25□□□□□ -0.13
SHMT2-227ENST00000557269 CDHR5Q9HBB8 845 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 ATP6V0A4Q9HBG4 840 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 TMEM39AQ9NV64 488 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 KBTBD4Q9NVX7 518 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 KAT6AQ92794 2004 aa14.25□□□□□ -0.13
SHMT2-227ENST00000557269 RSPH10B2B2RC85 870 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 HIP1RO75146 1068 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 SLFN14P0C7P3 912 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 RSPH10BP0C881 870 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 CKBP12277 381 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 MCM4P33991 863 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 ARL2P36404 184 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 THPOP40225 353 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 FAM160A1Q05DH4 1040 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 GIT2Q14161 759 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 ZNF618Q5T7W0 954 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 FAM102BQ5T8I3 360 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 TAF2Q6P1X5 1199 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 KRBA2Q6ZNG9 492 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 SV2BQ7L1I2 683 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 RETREG2Q8NC44 543 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 PRPF31Q8WWY3 499 aaKnown RBP14.24□□□□□ -0.13
SHMT2-227ENST00000557269 BSNDQ8WZ55 320 aa14.24□□□□□ -0.13
SHMT2-227ENST00000557269 PAGE5Q96GU1 130 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms