RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 TCRBV16S1A1N1A0A5B0 115 aa6.26□□□□□ -1.41
SCFD1-217ENST00000555953 SLC26A4O43511 780 aa6.26□□□□□ -1.41
SCFD1-217ENST00000555953 HIBADHP31937 336 aaKnown RBP6.26□□□□□ -1.41
SCFD1-217ENST00000555953 GRM7Q14831 915 aa6.26□□□□□ -1.41
SCFD1-217ENST00000555953 JMYQ8N9B5 988 aa6.26□□□□□ -1.41
SCFD1-217ENST00000555953 IGSF22Q8N9C0 903 aa6.26□□□□□ -1.41
SCFD1-217ENST00000555953 SHCBP1Q8NEM2 672 aa6.26□□□□□ -1.41
SCFD1-217ENST00000555953 FOXRED1Q96CU9 486 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-217ENST00000555953 TMEM176AQ96HP8 235 aa6.26□□□□□ -1.41
SCFD1-217ENST00000555953 PLEKHG4BQ96PX9 1271 aa6.26□□□□□ -1.41
SCFD1-217ENST00000555953 HECAQ9UBI9 543 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-217ENST00000555953 MAFO75444 373 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-217ENST00000555953 ZBTB48P10074 688 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-217ENST00000555953 APEX1P27695 318 aaKnown RBP6.25□□□□□ -1.41
SCFD1-217ENST00000555953 TGFB2P61812 414 aa6.25□□□□□ -1.41
SCFD1-217ENST00000555953 IRF9Q00978 393 aa6.25□□□□□ -1.41
SCFD1-217ENST00000555953 RBL2Q08999 1139 aa6.25□□□□□ -1.41
SCFD1-217ENST00000555953 TMEM177Q53S58 311 aa6.25□□□□□ -1.41
SCFD1-217ENST00000555953 RTN4RL1Q86UN2 441 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-217ENST00000555953 CALML6Q8TD86 181 aa6.25□□□□□ -1.41
SCFD1-217ENST00000555953 ERCC4Q92889 916 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-217ENST00000555953 TRIM39Q9HCM9 518 aa6.25□□□□□ -1.41
SCFD1-217ENST00000555953 PMS2P1A4D2B8 440 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 KCNQ2O43526 872 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 HIP1RO75146 1068 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 APPP05067 770 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 MCM7P33993 719 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 ALDH6A1Q02252 535 aaKnown RBP6.24□□□□□ -1.41
SCFD1-217ENST00000555953 ADAM15Q13444 863 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 RIN1Q13671 783 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 SAFB2Q14151 953 aaKnown RBP eCLIP6.24□□□□□ -1.41
SCFD1-217ENST00000555953 FNDC7Q5VTL7 733 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 ADGRE4PQ86SQ3 457 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 SGMS1Q86VZ5 419 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 D2HGDHQ8N465 521 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 C2orf69Q8N8R5 385 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 ZSWIM2Q8NEG5 633 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 ARMC5Q96C12 935 aa6.24□□□□□ -1.41
SCFD1-217ENST00000555953 MRPL4Q9BYD3 311 aaKnown RBP6.24□□□□□ -1.41
SCFD1-217ENST00000555953 CTDP1Q9Y5B0 961 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-217ENST00000555953 CAPN14A8MX76 684 aa6.23□□□□□ -1.41
SCFD1-217ENST00000555953 STAT3P40763 770 aa6.23□□□□□ -1.41
SCFD1-217ENST00000555953 HHEXQ03014 270 aa6.23□□□□□ -1.41
SCFD1-217ENST00000555953 SPTY2D1Q68D10 685 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-217ENST00000555953 CHFRQ96EP1 664 aa6.23□□□□□ -1.41
SCFD1-217ENST00000555953 C8orf37Q96NL8 207 aa6.23□□□□□ -1.41
SCFD1-217ENST00000555953 SRPK1Q96SB4 655 aaKnown RBP6.23□□□□□ -1.41
SCFD1-217ENST00000555953 TRIM8Q9BZR9 551 aa6.23□□□□□ -1.41
SCFD1-217ENST00000555953 CEP72Q9P209 647 aa6.23□□□□□ -1.41
SCFD1-217ENST00000555953 MAGEL2Q9UJ55 1249 aa6.23□□□□□ -1.41
SCFD1-217ENST00000555953 NPTXRO95502 500 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 MAP3K12Q12852 859 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 TUBA3CQ13748 450 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 ACAP1Q15027 740 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 TUBA3EQ6PEY2 450 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 OTOP1Q7RTM1 612 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 AMER2Q8N7J2 671 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 THAP3Q8WTV1 239 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-217ENST00000555953 FOXB1Q99853 325 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 BOCQ9BWV1 1114 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 ZNF703Q9H7S9 590 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-217ENST00000555953 GIT1Q9Y2X7 761 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 VWA7Q9Y334 891 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 PTCH2Q9Y6C5 1203 aa6.22□□□□□ -1.41
SCFD1-217ENST00000555953 CCDC163A0A0D9SF12 145 aa6.21□□□□□ -1.42
SCFD1-217ENST00000555953 KRTAP23-1A1A580 65 aa6.21□□□□□ -1.42
SCFD1-217ENST00000555953 MECP2P51608 486 aaKnown RBP6.21□□□□□ -1.42
SCFD1-217ENST00000555953 ADCY7P51828 1080 aa6.21□□□□□ -1.42
SCFD1-217ENST00000555953 ATP2C1P98194 919 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-217ENST00000555953 CC2D1AQ6P1N0 951 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-217ENST00000555953 KLHDC10Q6PID8 442 aa6.21□□□□□ -1.42
SCFD1-217ENST00000555953 NEU4Q8WWR8 484 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-217ENST00000555953 RABGGTAQ92696 567 aa6.21□□□□□ -1.42
SCFD1-217ENST00000555953 IKZF4Q9H2S9 585 aa6.21□□□□□ -1.42
SCFD1-217ENST00000555953 NCOA5Q9HCD5 579 aaKnown RBP6.21□□□□□ -1.42
SCFD1-217ENST00000555953 AURKAIP1Q9NWT8 199 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-217ENST00000555953 SH3BP1Q9Y3L3 701 aa6.21□□□□□ -1.42
SCFD1-217ENST00000555953 A0A1W2PRX2 142 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 DVL2O14641 736 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 KRT37O76014 449 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 RGS3P49796 1198 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 DPTQ07507 201 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 C2orf27AQ580R0 203 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 TMPRSS6Q8IU80 811 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 OR5AN1Q8NGI8 311 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 MKL1Q969V6 931 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 MMRN2Q9H8L6 949 aa6.2□□□□□ -1.42
SCFD1-217ENST00000555953 WDR33Q9C0J8 1336 aaKnown RBP6.2□□□□□ -1.42
SCFD1-217ENST00000555953 C2orf78A6NCI8 922 aa6.19□□□□□ -1.42
SCFD1-217ENST00000555953 M0R2C6 588 aa6.19□□□□□ -1.42
SCFD1-217ENST00000555953 PRLP01236 227 aa6.19□□□□□ -1.42
SCFD1-217ENST00000555953 FNTBP49356 437 aa6.19□□□□□ -1.42
SCFD1-217ENST00000555953 ANTXR2P58335 489 aa6.19□□□□□ -1.42
SCFD1-217ENST00000555953 SLC6A3Q01959 620 aa6.19□□□□□ -1.42
SCFD1-217ENST00000555953 RRP1BQ14684 758 aaKnown RBP6.19□□□□□ -1.42
SCFD1-217ENST00000555953 THEMISQ8N1K5 641 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-217ENST00000555953 LILRB2Q8N423 598 aa6.19□□□□□ -1.42
SCFD1-217ENST00000555953 ZNF483Q8TF39 744 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-217ENST00000555953 LPPQ93052 612 aa6.19□□□□□ -1.42
SCFD1-217ENST00000555953 GPHA2Q96T91 129 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms