RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 MYL1P05976 194 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 IGBP1P78318 339 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 ZNF200P98182 395 aaPredicted RBP11.34□□□□□ -0.59
SYNE2-215ENST00000554997 MDM2Q00987 491 aaPredicted RBP11.34□□□□□ -0.59
SYNE2-215ENST00000554997 TBC1D8BQ0IIM8 1120 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 DHX8Q14562 1220 aaKnown RBP11.34□□□□□ -0.59
SYNE2-215ENST00000554997 SNX17Q15036 470 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 GDF6Q6KF10 455 aaPredicted RBP11.34□□□□□ -0.59
SYNE2-215ENST00000554997 EFCAB12Q6NXP0 572 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 CNNM4Q6P4Q7 775 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 ANKRD33Q7Z3H0 272 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 SH3RF1Q7Z6J0 888 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 RETREG2Q8NC44 543 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 GPT2Q8TD30 523 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 DIS3LQ8TF46 1054 aaKnown RBP11.34□□□□□ -0.59
SYNE2-215ENST00000554997 PPP1R13LQ8WUF5 828 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 LMBR1Q8WVP7 490 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 TRAPPC12Q8WVT3 735 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 SLC7A3Q8WY07 619 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 CCDC43Q96MW1 224 aaKnown RBP11.34□□□□□ -0.59
SYNE2-215ENST00000554997 TOX2Q96NM4 488 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 MTRQ99707 1265 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 C7orf25Q9BPX7 421 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 TIPINQ9BVW5 301 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 SUGCTQ9HAC7 445 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 DACT1Q9NYF0 836 aa11.34□□□□□ -0.59
SYNE2-215ENST00000554997 SMIM35A0A1B0GVV1 85 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 MYMKA6NI61 221 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 CCDC85CA6NKD9 419 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 TREHO43280 583 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 GAS2O43903 313 aaKnown RBP11.33□□□□□ -0.6
SYNE2-215ENST00000554997 KINO60870 393 aaKnown RBP11.33□□□□□ -0.6
SYNE2-215ENST00000554997 MBD3O95983 291 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 GUCY2CP25092 1073 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 TMOD1P28289 359 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 DNM2P50570 870 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 POLGP54098 1239 aaPredicted RBP11.33□□□□□ -0.6
SYNE2-215ENST00000554997 GIT2Q14161 759 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 PTGISQ16647 500 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 FAM47CQ5HY64 1035 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 IER5Q5VY09 327 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 GPBP1Q86WP2 473 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 NME8Q8N427 588 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 LINC01465Q8N7H1 131 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 MCPH1Q8NEM0 835 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 DDX12PQ92771 950 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 ATP6V0A4Q9HBG4 840 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 KCNG1Q9UIX4 513 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 TUBE1Q9UJT0 475 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 DOCK5Q9H7D0 1870 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 TCHHQ07283 1943 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 MROH7Q68CQ1 1323 aa11.33□□□□□ -0.6
SYNE2-215ENST00000554997 ASAP2O43150 1006 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 CD4P01730 458 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 RPLP2P05387 115 aaKnown RBP11.32□□□□□ -0.6
SYNE2-215ENST00000554997 CYP2C9P11712 490 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 ARL2P36404 184 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 AFMP43652 599 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 ATN1P54259 1190 aaPredicted RBP11.32□□□□□ -0.6
SYNE2-215ENST00000554997 CDC42EP1Q00587 391 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 PTK7Q13308 1070 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 MKRN4PQ13434 485 aaPredicted RBP11.32□□□□□ -0.6
SYNE2-215ENST00000554997 NFKBIBQ15653 356 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 SKOR2Q2VWA4 1001 aaPredicted RBP11.32□□□□□ -0.6
SYNE2-215ENST00000554997 TAF2Q6P1X5 1199 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 RPAINQ86UA6 219 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 SERINC5Q86VE9 423 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 FAM126BQ8IXS8 530 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 KIAA0319LQ8IZA0 1049 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 ZNF710Q8N1W2 664 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 METTL13Q8N6R0 699 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 TCP11Q8WWU5 503 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 STAMQ92783 540 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 CTAGE1Q96RT6 745 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 RUSC1Q9BVN2 902 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 TRIM9Q9C026 710 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 TRPV6Q9H1D0 765 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 XPNPEP1Q9NQW7 623 aa11.32□□□□□ -0.6
SYNE2-215ENST00000554997 TRMT13Q9NUP7 481 aaKnown RBP11.32□□□□□ -0.6
SYNE2-215ENST00000554997 HOOK1Q9UJC3 728 aaKnown RBP11.32□□□□□ -0.6
SYNE2-215ENST00000554997 BRCA2P51587 3418 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 NPHP3-ACAD11A0A0J9YXS1 232 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 PVALEFA0A1B0GWK0 134 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 DCDC2CA8MYV0 355 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 TLR3O15455 904 aaKnown RBP11.31□□□□□ -0.6
SYNE2-215ENST00000554997 GTPBP6O43824 516 aaPredicted RBP11.31□□□□□ -0.6
SYNE2-215ENST00000554997 B4GALT4O60513 344 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 USO1O60763 962 aaKnown RBP11.31□□□□□ -0.6
SYNE2-215ENST00000554997 KRT18P05783 430 aaKnown RBP11.31□□□□□ -0.6
SYNE2-215ENST00000554997 RTP1P59025 263 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 TLE2Q04725 743 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 MXD4Q14582 209 aaPredicted RBP11.31□□□□□ -0.6
SYNE2-215ENST00000554997 EMC2Q15006 297 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 MAEAQ7L5Y9 396 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 DYMQ7RTS9 669 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 PRPF31Q8WWY3 499 aaKnown RBP11.31□□□□□ -0.6
SYNE2-215ENST00000554997 KIFAP3Q92845 792 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 TMEM143Q96AN5 459 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 DNAJC19Q96DA6 116 aa11.31□□□□□ -0.6
SYNE2-215ENST00000554997 ZBTB10Q96DT7 871 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms