RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CBWD6Q4V339 395 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 CBWD3Q5JTY5 395 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 CBWD5Q5RIA9 395 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 GBP6Q6ZN66 633 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 RNF207Q6ZRF8 634 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 PRPF38AQ8NAV1 312 aaKnown RBP6.11□□□□□ -1.43
LIMA1-215ENST00000552823 NLGN2Q8NFZ4 835 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 ZBTB10Q96DT7 871 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 GMCL1Q96IK5 515 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 BTBD6Q96KE9 485 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 FAM20AQ96MK3 541 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 OSBPL9Q96SU4 736 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 GBP3Q9H0R5 595 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 KCTD10Q9H3F6 313 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 OSGEPQ9NPF4 335 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 GABBR1Q9UBS5 961 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 HERC5Q9UII4 1024 aaKnown RBP6.11□□□□□ -1.43
LIMA1-215ENST00000552823 VAV3Q9UKW4 847 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 CASZ1Q86V15 1759 aa6.11□□□□□ -1.43
LIMA1-215ENST00000552823 TGFB1I1O43294 461 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 PPP1R12BO60237 982 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 ZBED4O75132 1171 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TUBB4AP04350 444 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TNFAIP3P21580 790 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 KCNA3P22001 575 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 RPL13P26373 211 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 OSTNP61366 133 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 FSTL1Q12841 308 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 PSMD2Q13200 908 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 ITGB3BPQ13352 177 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 IQCEQ6IPM2 695 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CCDC70Q6NSX1 233 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 AADACL2Q6P093 401 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 DPH6Q7L8W6 267 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 DAAM2Q86T65 1068 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 PALB2Q86YC2 1186 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 RETREG2Q8NC44 543 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 RBM46Q8TBY0 533 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CEP170P1Q96L14 293 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 NACC1Q96RE7 527 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TCHPQ9BT92 498 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 EPB41L5Q9HCM4 733 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 KCND1Q9NSA2 647 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TAS2R14Q9NYV8 317 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 NFU1Q9UMS0 254 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 GINS2Q9Y248 185 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 EMSYQ7Z589 1322 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 MYH7BA7E2Y1 1941 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 IGLV3-22A0A075B6J6 115 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CSDE1O75534 798 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CYP3A4P08684 503 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 KRT13P13646 458 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 KRT5P13647 590 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 VCAM1P19320 739 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 ATP1A2P50993 1020 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 HDLBPQ00341 1268 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CNTN2Q02246 1040 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 BEND6Q5SZJ8 279 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 C8orf74Q6P047 294 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 GADL1Q6ZQY3 521 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 HDXQ7Z353 690 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TRAPPC11Q7Z392 1133 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CPNE8Q86YQ8 564 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 GOLGA6L1Q8N7Z2 621 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TRIM58Q8NG06 486 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TRPM4Q8TD43 1214 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 SYTL5Q8TDW5 730 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 SLC20A1Q8WUM9 679 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 DHX38Q92620 1227 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TMEM143Q96AN5 459 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 MXRA8Q9BRK3 442 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 DDX47Q9H0S4 455 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 GLT8D2Q9H1C3 349 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 SH2D4AQ9H788 454 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 GGA3Q9NZ52 723 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 TMOD4Q9NZQ9 345 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 SEPT9Q9UHD8 586 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 DDX60LQ5H9U9 1706 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 ARAP2Q8WZ64 1704 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 ASTN1O14525 1302 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CNTNAP1P78357 1384 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 FOXN3O00409 490 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 PSMD10O75832 226 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 ZRANB2O95218 330 aaKnown RBP eCLIP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 SERPING1P05155 500 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CAPN2P17655 700 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 PSMC2P35998 433 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 NOVP48745 357 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 MRPS9P82933 396 aaKnown RBP6.1□□□□□ -1.43
LIMA1-215ENST00000552823 AMPD2Q01433 879 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 DMTNQ08495 405 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 GPS2Q13227 327 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 RPS6KA1Q15418 735 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 KLHDC7AQ5VTJ3 777 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 HGSNATQ68CP4 663 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 LLGL2Q6P1M3 1020 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 NLRX1Q86UT6 975 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 NCAPG2Q86XI2 1143 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CBWD2Q8IUF1 395 aa6.1□□□□□ -1.43
LIMA1-215ENST00000552823 CCDC170Q8IYT3 715 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms