RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PALB2Q86YC2 1186 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 GLYCTKQ8IVS8 523 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 MREGQ8N565 214 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 DCAF4Q8WV16 495 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 KAT2BQ92831 832 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 MKL1Q969V6 931 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 NAP1L4Q99733 375 aaKnown RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 TAF1DQ9H5J8 278 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 NYAP2Q9P242 653 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 NENFQ9UMX5 172 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 SUGT1Q9Y2Z0 365 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 RABGAP1Q9Y3P9 1069 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 BTNL10A8MVZ5 291 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 TTI1O43156 1089 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 DAPK3O43293 454 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 EVI5O60447 810 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 TBCAO75347 108 aaKnown RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 TRIM49P0CI25 452 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 TRIM49CP0CI26 452 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 ABCB4P21439 1286 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 LSP1P33241 339 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 ZNF76P36508 570 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 PRKCIP41743 596 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 GALCP54803 685 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 CBWD6Q4V339 395 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 CBWD3Q5JTY5 395 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 CBWD5Q5RIA9 395 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 DAAM2Q86T65 1068 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 TPH2Q8IWU9 490 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 ERMNQ8TAM6 284 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 ZC3H15Q8WU90 426 aaKnown RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 BORCS6Q96GS4 357 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 GJD4Q96KN9 370 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 ATP6V1G3Q96LB4 118 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 CCDC17Q96LX7 622 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 WDR18Q9BV38 432 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 ISCUQ9H1K1 167 aa8.18□□□□□ -1.1
LIMA1-213ENST00000552720 WRAP73Q9P2S5 460 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-213ENST00000552720 IGLV3-22A0A075B6J6 115 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 UBAP1LF5GYI3 381 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 PGRMC1O00264 195 aaKnown RBP8.17□□□□□ -1.1
LIMA1-213ENST00000552720 KRIT1O00522 736 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 TOM1O60784 492 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 FLOT1O75955 427 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 GH2P01242 217 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 H2AFZP0C0S5 128 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 HSPA9P38646 679 aaKnown RBP8.17□□□□□ -1.1
LIMA1-213ENST00000552720 ECE1P42892 770 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 KIAA1755Q5JYT7 1200 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 SYDE2Q5VT97 1194 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 MOXD1Q6UVY6 613 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 KDM7AQ6ZMT4 941 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 H2AFVQ71UI9 128 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 NT5DC3Q86UY8 548 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 EFCAB13Q8IY85 973 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 MYCT1Q8N699 235 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 RDH13Q8NBN7 331 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 BANK1Q8NDB2 785 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 ACTRT1Q8TDG2 376 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 WHAMMQ8TF30 809 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 PPM1EQ8WY54 764 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 DYDC2Q96IM9 177 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 TRIM31Q9BZY9 425 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 FAM107BQ9H098 131 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 DPH5Q9H2P9 285 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 TAS2R14Q9NYV8 317 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-213ENST00000552720 PI4KBQ9UBF8 816 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 PPP1R9AQ9ULJ8 1098 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 STXBP5LQ9Y2K9 1186 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 DCDC2CA8MYV0 355 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 H0YGN5 161 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 BACH1O14867 736 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 BUB1BO60566 1050 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-213ENST00000552720 SLITRK3O94933 977 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 CFBP00751 764 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 CYP2J2P51589 502 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 ITGB3BPQ13352 177 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-213ENST00000552720 PLS1Q14651 629 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 BMT2Q1RMZ1 405 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 ABCB5Q2M3G0 1257 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 DCAF12L1Q5VU92 463 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 FBXW10Q5XX13 1052 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 AADACL2Q6P093 401 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 TATDN1Q6P1N9 297 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 CD302Q8IX05 232 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 FAM186BQ8IYM0 893 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 SEPT12Q8IYM1 358 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 ARHGEF26Q96DR7 871 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 ZDHHC15Q96MV8 337 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.17□□□□□ -1.1
LIMA1-213ENST00000552720 TRIM51Q9BSJ1 452 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 GLT8D2Q9H1C3 349 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 TDRD3Q9H7E2 651 aaKnown RBP8.17□□□□□ -1.1
LIMA1-213ENST00000552720 TMBIM4Q9HC24 238 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 FBXL5Q9UKA1 691 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 NFS1Q9Y697 457 aa8.17□□□□□ -1.1
LIMA1-213ENST00000552720 BZW2Q9Y6E2 419 aaKnown RBP8.17□□□□□ -1.1
LIMA1-213ENST00000552720 A0A087WUV0 522 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-213ENST00000552720 TISP43B9A030 160 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms