RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ETNPPLQ8TBG4 499 aa18.41■□□□□ 0.54
VPS29-207ENST00000549970 MBOAT7Q96N66 472 aa18.41■□□□□ 0.54
VPS29-207ENST00000549970 MAP7D2Q96T17 732 aa18.41■□□□□ 0.54
VPS29-207ENST00000549970 UBE2ZQ9H832 354 aaPredicted RBP18.41■□□□□ 0.54
VPS29-207ENST00000549970 ORC3Q9UBD5 711 aaPredicted RBP18.41■□□□□ 0.54
VPS29-207ENST00000549970 LRFN2Q9ULH4 789 aa18.41■□□□□ 0.54
VPS29-207ENST00000549970 MYO7AQ13402 2215 aa18.41■□□□□ 0.54
VPS29-207ENST00000549970 DENND3A2RUS2 1198 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 C5orf67F2Z3F1 127 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 GPR182O15218 404 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 GPR32O75388 356 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 CSPG5O95196 566 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 LARGE1O95461 756 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 RB1P06400 928 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 CENPBP07199 599 aaPredicted RBP18.4■□□□□ 0.54
VPS29-207ENST00000549970 TMOD1P28289 359 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 GATMP50440 423 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 ME3Q16798 604 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 ODR4Q5SWX8 454 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 BANK1Q8NDB2 785 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 RDM1Q8NG50 284 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 OXER1Q8TDS5 423 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 CLP1Q92989 425 aaKnown RBP18.4■□□□□ 0.54
VPS29-207ENST00000549970 ZNF668Q96K58 619 aaPredicted RBP18.4■□□□□ 0.54
VPS29-207ENST00000549970 ADAM2Q99965 735 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 C11orf84Q9BUA3 381 aaPredicted RBP18.4■□□□□ 0.54
VPS29-207ENST00000549970 SEPT9Q9UHD8 586 aaPredicted RBP18.4■□□□□ 0.54
VPS29-207ENST00000549970 MRPL42Q9Y6G3 142 aaKnown RBP18.4■□□□□ 0.54
VPS29-207ENST00000549970 NCOR1O75376 2440 aa18.4■□□□□ 0.54
VPS29-207ENST00000549970 SARSP49591 514 aaKnown RBP18.39■□□□□ 0.53
VPS29-207ENST00000549970 NLRP11P59045 1033 aaKnown RBP18.39■□□□□ 0.53
VPS29-207ENST00000549970 MTERF2Q49AM1 385 aa18.39■□□□□ 0.53
VPS29-207ENST00000549970 B3GNT9Q6UX72 402 aa18.39■□□□□ 0.53
VPS29-207ENST00000549970 PIK3AP1Q6ZUJ8 805 aa18.39■□□□□ 0.53
VPS29-207ENST00000549970 NEK8Q86SG6 692 aa18.39■□□□□ 0.53
VPS29-207ENST00000549970 CMTR2Q8IYT2 770 aaKnown RBP18.39■□□□□ 0.53
VPS29-207ENST00000549970 LINC01465Q8N7H1 131 aa18.39■□□□□ 0.53
VPS29-207ENST00000549970 WASF1Q92558 559 aa18.39■□□□□ 0.53
VPS29-207ENST00000549970 GTF3C6Q969F1 213 aa18.39■□□□□ 0.53
VPS29-207ENST00000549970 PCDHB7Q9Y5E2 793 aa18.39■□□□□ 0.53
VPS29-207ENST00000549970 KIAA1671Q9BY89 1806 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 TMEM150BA6NC51 233 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 GRM6O15303 877 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 SEC24BO95487 1268 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 KCNA5P22460 613 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 NEK4P51957 841 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 TBC1D8BQ0IIM8 1120 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 TCEAL5Q5H9L2 206 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 SH2D3AQ9BRG2 576 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 NSUN3Q9H649 340 aaKnown RBP18.38■□□□□ 0.53
VPS29-207ENST00000549970 RGS18Q9NS28 235 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 C1orf112Q9NSG2 853 aa18.38■□□□□ 0.53
VPS29-207ENST00000549970 ATG2AQ2TAZ0 1938 aa18.37■□□□□ 0.53
VPS29-207ENST00000549970 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.37■□□□□ 0.53
VPS29-207ENST00000549970 CCNT1O60563 726 aaKnown RBP18.37■□□□□ 0.53
VPS29-207ENST00000549970 EIF5BO60841 1220 aaKnown RBP18.37■□□□□ 0.53
VPS29-207ENST00000549970 FDPSP14324 419 aaKnown RBP18.37■□□□□ 0.53
VPS29-207ENST00000549970 XKR3Q5GH77 459 aa18.37■□□□□ 0.53
VPS29-207ENST00000549970 EARS2Q5JPH6 523 aaKnown RBP18.37■□□□□ 0.53
VPS29-207ENST00000549970 SLC24A5Q71RS6 500 aa18.37■□□□□ 0.53
VPS29-207ENST00000549970 SCLT1Q96NL6 688 aa18.37■□□□□ 0.53
VPS29-207ENST00000549970 PLVAPQ9BX97 442 aa18.37■□□□□ 0.53
VPS29-207ENST00000549970 ADAMTS10Q9H324 1103 aa18.37■□□□□ 0.53
VPS29-207ENST00000549970 FAM205CA6NFA0 338 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 C9IYK1 514 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 EML1O00423 815 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 STBD1O95210 358 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 GCFC2P16383 781 aaKnown RBP18.36■□□□□ 0.53
VPS29-207ENST00000549970 KRT2P35908 639 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 GPC3P51654 580 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 FOSBP53539 338 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 NR5A1Q13285 461 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 TARBP2Q15633 366 aaKnown RBP18.36■□□□□ 0.53
VPS29-207ENST00000549970 PPP4R3AQ6IN85 833 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 EP400NLQ6ZTU2 488 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 FAM20AQ96MK3 541 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 NIFKQ9BYG3 293 aaKnown RBP18.36■□□□□ 0.53
VPS29-207ENST00000549970 LMAN2LQ9H0V9 348 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 BRMS1Q9HCU9 246 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 ALG13Q9NP73 1137 aaKnown RBP18.36■□□□□ 0.53
VPS29-207ENST00000549970 KCNMB3Q9NPA1 279 aa18.36■□□□□ 0.53
VPS29-207ENST00000549970 TBKBP1A7MCY6 615 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 DDX11L8A8MPP1 907 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 MARCH6O60337 910 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 JAK2O60674 1132 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 EIF4BP23588 611 aaKnown RBP18.35■□□□□ 0.53
VPS29-207ENST00000549970 PPP2R5CQ13362 524 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 DRP2Q13474 957 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 FAM102BQ5T8I3 360 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 FAM43BQ6ZT52 329 aaPredicted RBP18.35■□□□□ 0.53
VPS29-207ENST00000549970 POTEDQ86YR6 584 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 NSUN7Q8NE18 718 aaKnown RBP18.35■□□□□ 0.53
VPS29-207ENST00000549970 NLRP7Q8WX94 980 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 RNF216Q9NWF9 866 aaPredicted RBP18.35■□□□□ 0.53
VPS29-207ENST00000549970 VAV3Q9UKW4 847 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 PLAGL2Q9UPG8 496 aa18.35■□□□□ 0.53
VPS29-207ENST00000549970 FNDC1Q4ZHG4 1894 aaPredicted RBP18.35■□□□□ 0.53
VPS29-207ENST00000549970 MMP1P03956 469 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 FGFR4P22455 802 aa18.34■□□□□ 0.53
VPS29-207ENST00000549970 PSMC5P62195 406 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms