RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 FAM102BQ5T8I3 360 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 EEPD1Q7L9B9 569 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 MCF2L2Q86YR7 1114 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 FAM186BQ8IYM0 893 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 CCDC170Q8IYT3 715 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 COG1Q8WTW3 980 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 SPAG5Q96R06 1193 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 CBWD1Q9BRT8 395 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 CEP72Q9P209 647 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 UBIAD1Q9Y5Z9 338 aa12.16□□□□□ -0.46
CUX1-212ENST00000547394 POLR2AP24928 1970 aaKnown RBP12.15□□□□□ -0.46
CUX1-212ENST00000547394 TMCO5BA8MYB1 307 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 SASH3O75995 380 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 UCHL3P15374 230 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 YWHABP31946 246 aaKnown RBP12.15□□□□□ -0.46
CUX1-212ENST00000547394 RARRES1P49788 294 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 PEX3P56589 373 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 CNTN2Q02246 1040 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 PTK2Q05397 1052 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 KLHL30Q0D2K2 578 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 PCNX4Q63HM2 1172 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 AGPAT3Q9NRZ7 376 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 KIF13BQ9NQT8 1826 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 RGS20O76081 388 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 FTCDO95954 541 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 NR3C2P08235 984 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 XKR9Q5GH70 373 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 GSPT2Q8IYD1 628 aaKnown RBP12.15□□□□□ -0.46
CUX1-212ENST00000547394 CAGE1Q8TC20 777 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 KLRG1Q96E93 195 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 RIT2Q99578 217 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 OLFML3Q9NRN5 406 aa12.15□□□□□ -0.46
CUX1-212ENST00000547394 ZNF214Q9UL59 606 aaPredicted RBP12.15□□□□□ -0.46
CUX1-212ENST00000547394 CTAGE15A4D2H0 777 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 EXOC3O60645 756 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 GNA14O95837 355 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 P4HBP07237 508 aaKnown RBP12.14□□□□□ -0.47
CUX1-212ENST00000547394 CTAGE8P0CG41 777 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 QARSP47897 775 aaKnown RBP12.14□□□□□ -0.47
CUX1-212ENST00000547394 C2orf54Q08AI8 447 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 DCAF15Q66K64 600 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 TMCO3Q6UWJ1 677 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 CTAGE6Q86UF2 777 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 CTAGE4Q8IX94 777 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 CD2APQ9Y5K6 639 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 SAR1BQ9Y6B6 198 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 CCDC169A6NNP5 214 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 GFPT2O94808 682 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 HNRNPH3P31942 346 aaKnown RBP12.14□□□□□ -0.47
CUX1-212ENST00000547394 ASIC2Q16515 512 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 ARHGAP44Q17R89 818 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 ASTE1Q2TB18 679 aaPredicted RBP12.14□□□□□ -0.47
CUX1-212ENST00000547394 SLC9C1Q4G0N8 1177 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 DPY19L2P1Q6NXN4 242 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 TRAPPC11Q7Z392 1133 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 ZNF571Q7Z3V5 609 aaPredicted RBP12.14□□□□□ -0.47
CUX1-212ENST00000547394 ZNF526Q8TF50 670 aaPredicted RBP12.14□□□□□ -0.47
CUX1-212ENST00000547394 FBXO41Q8TF61 875 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 MS4A14Q96JA4 679 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 GBP3Q9H0R5 595 aa12.14□□□□□ -0.47
CUX1-212ENST00000547394 ECM2O94769 699 aaPredicted RBP12.13□□□□□ -0.47
CUX1-212ENST00000547394 GAP43P17677 238 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 KLRC1P26715 233 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 VSNL1P62760 191 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 VGLL4Q14135 290 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 KLHDC7AQ5VTJ3 777 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 PPP4R3CPQ6ZMV5 832 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 FRMD5Q7Z6J6 570 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 SAAL1Q96ER3 474 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 CLMNQ96JQ2 1002 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 A1CFQ9NQ94 594 aaKnown RBP12.13□□□□□ -0.47
CUX1-212ENST00000547394 GABBR1Q9UBS5 961 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 RPL13P26373 211 aaKnown RBP12.13□□□□□ -0.47
CUX1-212ENST00000547394 USP14P54578 494 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 MARSP56192 900 aaKnown RBP12.13□□□□□ -0.47
CUX1-212ENST00000547394 IQCEQ6IPM2 695 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 SWSAP1Q6NVH7 229 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 ANO5Q75V66 913 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 HS2ST1Q7LGA3 356 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 ZC3H3Q8IXZ2 948 aaKnown RBP12.13□□□□□ -0.47
CUX1-212ENST00000547394 SMAP1Q8IYB5 467 aaPredicted RBP12.13□□□□□ -0.47
CUX1-212ENST00000547394 PAGR1Q9BTK6 254 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 SIX2Q9NPC8 291 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 SSC5DA1L4H1 1573 aa12.13□□□□□ -0.47
CUX1-212ENST00000547394 ZNF862O60290 1169 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 SP2Q02086 613 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 BMT2Q1RMZ1 405 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 KIAA0753Q2KHM9 967 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 CC2D1AQ6P1N0 951 aaPredicted RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 GPR161Q8N6U8 529 aaKnown RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 REPS2Q8NFH8 660 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 RABGGTAQ92696 567 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 POP1Q99575 1024 aaKnown RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 ZCCHC17Q9NP64 241 aaKnown RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 ACP6Q9NPH0 428 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 CHORDC1Q9UHD1 332 aaPredicted RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 SPDYE16A6NNV3 312 aaPredicted RBP12.12□□□□□ -0.47
CUX1-212ENST00000547394 SERPING1P05155 500 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 DSG3P32926 999 aa12.12□□□□□ -0.47
CUX1-212ENST00000547394 PSMC2P35998 433 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms