RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SPATC1LQ9H0A9 340 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ALDH8A1Q9H2A2 487 aaPredicted RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 SLC38A10Q9HBR0 1119 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 NDFIP2Q9NV92 336 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 RBM28Q9NW13 759 aaKnown RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 TMEM260Q9NX78 707 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 KCNG1Q9UIX4 513 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 POLIQ9UNA4 740 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 CCDC196A0A1B0GTZ2 297 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.85□□□□□ -1.47
CLIP1-217ENST00000543205 EFSO43281 561 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 SLC25A27O95847 323 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 PCSK2P16519 638 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 LIG1P18858 919 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 FGFR3P22607 806 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 HOXD10P28358 340 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 MAPK4P31152 587 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 COPB2P35606 906 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 PSMC4P43686 418 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 RCAN1P53805 252 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 OAZ1P54368 228 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 AK2P54819 239 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 ORC1Q13415 861 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 BRD3Q15059 726 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 PPP2R5AQ15172 486 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 PPP2R5BQ15173 497 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 RABEP1Q15276 862 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 SNRNP48Q6IEG0 339 aaKnown RBP5.85□□□□□ -1.47
CLIP1-217ENST00000543205 PCGF5Q86SE9 256 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 NCAPG2Q86XI2 1143 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 HOMER1Q86YM7 354 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 COA7Q96BR5 231 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 MOV10L1Q9BXT6 1211 aaKnown RBP5.85□□□□□ -1.47
CLIP1-217ENST00000543205 TEX13BQ9BXU2 312 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 AGXT2Q9BYV1 514 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 CPVLQ9H3G5 476 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 RAVER2Q9HCJ3 691 aaKnown RBP5.85□□□□□ -1.47
CLIP1-217ENST00000543205 MARK1Q9P0L2 795 aa5.85□□□□□ -1.47
CLIP1-217ENST00000543205 TNPO2O14787 897 aaKnown RBP5.84□□□□□ -1.47
CLIP1-217ENST00000543205 ATP2A1O14983 1001 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 PDGFAP04085 211 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 FAM163BP0C2L3 166 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 CD33P20138 364 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 SMARCA1P28370 1054 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 PDIA3P30101 505 aaKnown RBP5.84□□□□□ -1.47
CLIP1-217ENST00000543205 STK3Q13188 491 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 LAMC2Q13753 1193 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 CDC37Q16543 378 aaPredicted RBP5.84□□□□□ -1.47
CLIP1-217ENST00000543205 RIOX2Q8IUF8 465 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 CACTIN-AS1Q8N1I8 211 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 CELF2-AS1Q8N7Q2 184 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 TTC16Q8NEE8 873 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 SHCBP1Q8NEM2 672 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 REPS2Q8NFH8 660 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 RRP36Q96EU6 259 aaKnown RBP5.84□□□□□ -1.47
CLIP1-217ENST00000543205 ZNF274Q96GC6 653 aaPredicted RBP5.84□□□□□ -1.47
CLIP1-217ENST00000543205 KIF2CQ99661 725 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 NAP1L4Q99733 375 aaKnown RBP5.84□□□□□ -1.47
CLIP1-217ENST00000543205 ARHGAP39Q9C0H5 1083 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 RANBP17Q9H2T7 1088 aaKnown RBP5.84□□□□□ -1.47
CLIP1-217ENST00000543205 MROH8Q9H579 483 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 JMJD4Q9H9V9 463 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 EFCC1Q9HA90 598 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 CASS4Q9NQ75 786 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 SEC63Q9UGP8 760 aaKnown RBP5.84□□□□□ -1.47
CLIP1-217ENST00000543205 CCPG1Q9ULG6 757 aa5.84□□□□□ -1.47
CLIP1-217ENST00000543205 CPLX1O14810 134 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 ZBTB5O15062 677 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 PLEKHA8P1O95397 391 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 ICAM1P05362 532 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 ALAS1P13196 640 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 CDC27P30260 824 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 EVCP57679 992 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 CCT2P78371 535 aaKnown RBP5.84□□□□□ -1.48
CLIP1-217ENST00000543205 POU5F1BQ06416 359 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 TRAF1Q13077 416 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 TMTC3Q6ZXV5 915 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 ERMP1Q7Z2K6 904 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 GPR142Q7Z601 462 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 PLEKHH3Q7Z736 793 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 SRBD1Q8N5C6 995 aaKnown RBP5.84□□□□□ -1.48
CLIP1-217ENST00000543205 PIBF1Q8WXW3 757 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 SEC16BQ96JE7 1060 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 PIGSQ96S52 555 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 SPZ1Q9BXG8 430 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 PORCNQ9H237 461 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 RIOX1Q9H6W3 641 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 PTPRHQ9HD43 1115 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 FBXO40Q9UH90 709 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 ZNF214Q9UL59 606 aaPredicted RBP5.84□□□□□ -1.48
CLIP1-217ENST00000543205 TPCN1Q9ULQ1 816 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 EFR3BQ9Y2G0 817 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 TRIM17Q9Y577 477 aa5.84□□□□□ -1.48
CLIP1-217ENST00000543205 KRTAP9-6A0A140TA67 174 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 STRNO43815 780 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 FCER1AP12319 257 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 GRNP28799 593 aaKnown RBP5.83□□□□□ -1.48
CLIP1-217ENST00000543205 CTGFP29279 349 aa5.83□□□□□ -1.48
CLIP1-217ENST00000543205 AKAP17AQ02040 695 aaKnown RBP5.83□□□□□ -1.48
CLIP1-217ENST00000543205 KCTD2Q14681 263 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms