RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SELENOOQ9BVL4 669 aa8.71□□□□□ -1.01
PDLIM5-221ENST00000542407 GUCA1BQ9UMX6 200 aa8.71□□□□□ -1.01
PDLIM5-221ENST00000542407 PHF20L1A8MW92 1017 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 RPS12P25398 132 aaKnown RBP8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 FXR2P51116 673 aaKnown RBP eCLIP8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 SNAP25P60880 206 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 COL19A1Q14993 1142 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 KBTBD12Q3ZCT8 623 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 SYDE2Q5VT97 1194 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 WDR93Q6P2C0 686 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 MTHFD1LQ6UB35 978 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 B4GALNT4Q76KP1 1039 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 MIPOL1Q8TD10 442 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 PCMTD1Q96MG8 357 aaPredicted RBP8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 BLZF1Q9H2G9 400 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 PSTPIP2Q9H939 334 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 HOMER3Q9NSC5 361 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 KBTBD4Q9NVX7 518 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 PCDHA1Q9Y5I3 950 aa8.71□□□□□ -1.02
PDLIM5-221ENST00000542407 AGPSO00116 658 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 ERCC5P28715 1186 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 CAP2P40123 477 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP14P54578 494 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 MRPS25P82663 173 aaKnown RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 TUBB2AQ13885 445 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 TNIP1Q15025 636 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 KCTD16Q68DU8 428 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 OLFML1Q6UWY5 402 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 UBE2Q1Q7Z7E8 422 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 FBXO22Q8NEZ5 403 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 JDP2Q8WYK2 163 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 HAS1Q92839 578 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 CCDC114Q96M63 670 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 MBOAT7Q96N66 472 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 EPAS1Q99814 870 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 SLC39A3Q9BRY0 314 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 TUBB2BQ9BVA1 445 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 INO80BQ9C086 356 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L15C9J2P7 530 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L13C9JLJ4 530 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L11C9JVI0 530 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L18D6R9N7 530 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L22D6RA61 530 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L17D6RBQ6 530 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L19D6RCP7 530 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L20D6RJB6 530 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 MEFVO15553 781 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 KLRC4O43908 158 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 OPA1O60313 960 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 TAL1P17542 331 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 STAT6P42226 847 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 TNNI2P48788 182 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 FNTAP49354 379 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 STX17P56962 302 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L24Q0WX57 530 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 C4orf46Q504U0 113 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 USP17L6PQ6QN14 398 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 MICALCLQ6ZW33 695 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 SND1Q7KZF4 910 aaKnown RBP eCLIP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 MIGA2Q7L4E1 593 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 KIAA1328Q86T90 577 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 NLGN2Q8NFZ4 835 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 GABPB2Q8TAK5 448 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 RUFY1Q96T51 708 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 MMS19Q96T76 1030 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 SLF1Q9BQI6 1058 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 EXOC1Q9NV70 894 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 DACH1Q9UI36 760 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 ASTN2O75129 1339 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 PPP1R12BO60237 982 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 PLCG1P19174 1290 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 ATICP31939 592 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 CASP14P31944 242 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 GBP2P32456 591 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 TECP42680 631 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 SCNN1BP51168 640 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 CALCRLQ16602 461 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 KIAA0753Q2KHM9 967 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 CCDC40Q4G0X9 1142 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 SMUG1Q53HV7 270 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 CDCA2Q69YH5 1023 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 APTXQ7Z2E3 356 aaKnown RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 CABP7Q86V35 215 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 SMYD4Q8IYR2 804 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 SPICE1Q8N0Z3 855 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 AMNQ9BXJ7 453 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 GLIS2Q9BZE0 524 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 GLT8D2Q9H1C3 349 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 PPP1R1BQ9UD71 204 aaPredicted RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 TRIM10Q9UDY6 481 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 PRR12Q9ULL5 1215 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 SCAF8Q9UPN6 1271 aaKnown RBP8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 BCS1LQ9Y276 419 aa8.7□□□□□ -1.02
PDLIM5-221ENST00000542407 GRIN2DO15399 1336 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 CYP3A7-CYP3A51PA0A087WV96 503 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 DPYSL4O14531 572 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 ATP2C2O75185 946 aa8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 RPN1P04843 607 aaKnown RBP8.69□□□□□ -1.02
PDLIM5-221ENST00000542407 CYP3A7P24462 503 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms