RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 HOXA2O43364 376 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 FAM86B2P0C5J1 330 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 ERVFC1P60507 584 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 JAKMIP3Q5VZ66 844 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 MCTP2Q6DN12 878 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 DHX32Q7L7V1 743 aaKnown RBP17.51■□□□□ 0.39
RTN3-211ENST00000542238 PPP1R16BQ96T49 567 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 ZNF577Q9BSK1 485 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 BRPF3Q9ULD4 1205 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 CEP131Q9UPN4 1083 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 LZTS1Q9Y250 596 aa17.51■□□□□ 0.39
RTN3-211ENST00000542238 ZBTB42B2RXF5 422 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 DHX15O43143 795 aaKnown RBP17.5■□□□□ 0.39
RTN3-211ENST00000542238 C22orf31O95567 290 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 PSAPP07602 524 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 CYP3A4P08684 503 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 FGFR1P11362 822 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 ATP4AP20648 1035 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 PTPN5P54829 565 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 IRX6P78412 446 aaPredicted RBP17.5■□□□□ 0.39
RTN3-211ENST00000542238 FAM189BP81408 668 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 SETQ01105 290 aaPredicted RBP17.5■□□□□ 0.39
RTN3-211ENST00000542238 EXOSC10Q01780 885 aaKnown RBP17.5■□□□□ 0.39
RTN3-211ENST00000542238 ZNF746Q6NUN9 644 aaPredicted RBP17.5■□□□□ 0.39
RTN3-211ENST00000542238 TRMT1LQ7Z2T5 733 aaKnown RBP17.5■□□□□ 0.39
RTN3-211ENST00000542238 FAM228AQ86W67 206 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 SMAP1Q8IYB5 467 aaPredicted RBP17.5■□□□□ 0.39
RTN3-211ENST00000542238 TCEANC2Q96MN5 208 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 TMEM117Q9H0C3 514 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 NAP1L2Q9ULW6 460 aaPredicted RBP17.5■□□□□ 0.39
RTN3-211ENST00000542238 MAFBQ9Y5Q3 323 aaPredicted RBP17.5■□□□□ 0.39
RTN3-211ENST00000542238 WDR81Q562E7 1941 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 ZDBF2Q9HCK1 2354 aa17.5■□□□□ 0.39
RTN3-211ENST00000542238 IGLV3-22A0A075B6J6 115 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 KLF18A0A0U1RQI7 1052 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 FSCN2O14926 492 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 MAGEB2O15479 319 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 VTNP04004 478 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 ZSCAN20P17040 1043 aaPredicted RBP17.49■□□□□ 0.39
RTN3-211ENST00000542238 FGD1P98174 961 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 RBM10P98175 930 aaKnown RBP17.49■□□□□ 0.39
RTN3-211ENST00000542238 PLCB3Q01970 1234 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 SIGLEC14Q08ET2 396 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 PLPP4Q5VZY2 271 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 ABI1Q8IZP0 508 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 FBXL6Q8N531 539 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 VN1R2Q8NFZ6 395 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 CCDC12Q8WUD4 166 aaPredicted RBP17.49■□□□□ 0.39
RTN3-211ENST00000542238 SUSD6Q92537 303 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 MRPS27Q92552 414 aaKnown RBP17.49■□□□□ 0.39
RTN3-211ENST00000542238 MAP7D2Q96T17 732 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 CWH43Q9H720 699 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 C6orf50Q9HD87 102 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 NGRNQ9NPE2 291 aaKnown RBP17.49■□□□□ 0.39
RTN3-211ENST00000542238 ENTPD7Q9NQZ7 604 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 HCSTQ9UBK5 93 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 PCDHA10Q9Y5I2 948 aa17.49■□□□□ 0.39
RTN3-211ENST00000542238 CCDC196A0A1B0GTZ2 297 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 GPR32O75388 356 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 TMOD1P28289 359 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 PPM1AP35813 382 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 TECP42680 631 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 RCAN1P53805 252 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 KRT17Q04695 432 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 KRT32Q14532 448 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 DSC3Q14574 896 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 PFKFB3Q16875 520 aaPredicted RBP17.48■□□□□ 0.39
RTN3-211ENST00000542238 TMEM184AQ6ZMB5 413 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 ZNF710Q8N1W2 664 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 PRSS33Q8NF86 280 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 FAM167AQ96KS9 214 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 TCF25Q9BQ70 676 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 GABBR1Q9UBS5 961 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 AKT3Q9Y243 479 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 SAMM50Q9Y512 469 aa17.48■□□□□ 0.39
RTN3-211ENST00000542238 ESYT2A0FGR8 921 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 CDC27P30260 824 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 NLRP11P59045 1033 aaKnown RBP17.47■□□□□ 0.39
RTN3-211ENST00000542238 APOBRQ0VD83 1088 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 IER5LQ5T953 404 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 EFCAB12Q6NXP0 572 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 ANKRD54Q6NXT1 300 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 KCNT2Q6UVM3 1135 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 ZBTB33Q86T24 672 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 REXO1Q8N1G1 1221 aaKnown RBP17.47■□□□□ 0.39
RTN3-211ENST00000542238 LRRC43Q8N309 656 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 RASGRP4Q8TDF6 673 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 CRYGNQ8WXF5 182 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 ZNF558Q96NG5 402 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 FAM217BQ9NTX9 383 aaPredicted RBP17.47■□□□□ 0.39
RTN3-211ENST00000542238 KMT2EQ8IZD2 1858 aa17.47■□□□□ 0.39
RTN3-211ENST00000542238 HMGB1P09429 215 aaKnown RBP17.46■□□□□ 0.39
RTN3-211ENST00000542238 HOXB8P17481 243 aaPredicted RBP17.46■□□□□ 0.39
RTN3-211ENST00000542238 GNA11P29992 359 aa17.46■□□□□ 0.39
RTN3-211ENST00000542238 METAP2P50579 478 aaKnown RBP eCLIP17.46■□□□□ 0.39
RTN3-211ENST00000542238 CLCN3P51790 818 aa17.46■□□□□ 0.39
RTN3-211ENST00000542238 PTPN21Q16825 1174 aa17.46■□□□□ 0.39
RTN3-211ENST00000542238 TSGA10IPQ3SY00 556 aa17.46■□□□□ 0.39
RTN3-211ENST00000542238 PRR16Q569H4 304 aa17.46■□□□□ 0.39
RTN3-211ENST00000542238 LLGL2Q6P1M3 1020 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms