RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 LBX2Q6XYB7 198 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 FRMD5Q7Z6J6 570 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 ZSWIM2Q8NEG5 633 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 MOV10L1Q9BXT6 1211 aaKnown RBP15.94■□□□□ 0.14
CLIP1-216ENST00000541410 EPC1Q9H2F5 836 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 AGPAT3Q9NRZ7 376 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 KCND2Q9NZV8 630 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 PCDHA10Q9Y5I2 948 aa15.94■□□□□ 0.14
CLIP1-216ENST00000541410 PAPPA2Q9BXP8 1791 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 MACROD2A1Z1Q3 448 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 ENC1O14682 589 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 SLC16A4O15374 487 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 AFPP02771 609 aaKnown RBP15.93■□□□□ 0.14
CLIP1-216ENST00000541410 JAK3P52333 1124 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 IRX3P78415 501 aaPredicted RBP15.93■□□□□ 0.14
CLIP1-216ENST00000541410 RAPGEF1Q13905 1077 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 MNS1Q8NEH6 495 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 ZNF526Q8TF50 670 aaPredicted RBP15.93■□□□□ 0.14
CLIP1-216ENST00000541410 SLC35C1Q96A29 364 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 GPRASP2Q96D09 838 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 GBP3Q9H0R5 595 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 FAM184BQ9ULE4 1060 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 TLR2O60603 784 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 TRIM49P0CI25 452 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 TRIM49CP0CI26 452 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 KIF11P52732 1056 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 GFPT1Q06210 699 aaPredicted RBP15.93■□□□□ 0.14
CLIP1-216ENST00000541410 GJB7Q6PEY0 223 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 CYFIP1Q7L576 1253 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 HS2ST1Q7LGA3 356 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 CCDC60Q8IWA6 550 aaPredicted RBP15.93■□□□□ 0.14
CLIP1-216ENST00000541410 C4orf19Q8IY42 314 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 FAM186BQ8IYM0 893 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 ANKRD7Q92527 254 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 JAKMIP2Q96AA8 810 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 ZNF408Q9H9D4 720 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 JPH1Q9HDC5 661 aaPredicted RBP15.93■□□□□ 0.14
CLIP1-216ENST00000541410 LARSQ9P2J5 1176 aaKnown RBP15.93■□□□□ 0.14
CLIP1-216ENST00000541410 SEL1LQ9UBV2 794 aa15.93■□□□□ 0.14
CLIP1-216ENST00000541410 DBR1Q9UK59 544 aaKnown RBP15.93■□□□□ 0.14
CLIP1-216ENST00000541410 FAM170AA1A519 330 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 AKR1B10O60218 316 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 IPO7O95373 1038 aaKnown RBP15.92■□□□□ 0.14
CLIP1-216ENST00000541410 FAM133AQ8N9E0 248 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 ASCC2Q9H1I8 757 aaPredicted RBP15.92■□□□□ 0.14
CLIP1-216ENST00000541410 TXNRD2Q9NNW7 524 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 CEP72Q9P209 647 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 MRFAP1Q9Y605 127 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 CCDC169A6NNP5 214 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 EIF3CLB5ME19 914 aaKnown RBP15.92■□□□□ 0.14
CLIP1-216ENST00000541410 POTEJP0CG39 1038 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 PNMA6AP0CW24 399 aaPredicted RBP15.92■□□□□ 0.14
CLIP1-216ENST00000541410 SFNP31947 248 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 ANKRD13AQ8IZ07 590 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 ANKRD13CQ8N6S4 541 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 CEP170P1Q96L14 293 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 EIF3CQ99613 913 aaKnown RBP15.92■□□□□ 0.14
CLIP1-216ENST00000541410 SPATC1LQ9H0A9 340 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 SLC9A2Q9UBY0 812 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 AJAP1Q9UKB5 411 aaPredicted RBP15.92■□□□□ 0.14
CLIP1-216ENST00000541410 FHOD1Q9Y613 1164 aa15.92■□□□□ 0.14
CLIP1-216ENST00000541410 PPP1R37O75864 691 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 PGK2P07205 417 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 PLS3P13797 630 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 PON1P27169 355 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 HNRNPH3P31942 346 aaKnown RBP15.91■□□□□ 0.14
CLIP1-216ENST00000541410 PSMC2P35998 433 aaKnown RBP15.91■□□□□ 0.14
CLIP1-216ENST00000541410 ACTR2P61160 394 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 KRT83P78385 493 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 EXOC3L4Q17RC7 722 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 WDR78Q5VTH9 848 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 SFMBT2Q5VUG0 894 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 HGSNATQ68CP4 663 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 ZNF746Q6NUN9 644 aaPredicted RBP15.91■□□□□ 0.14
CLIP1-216ENST00000541410 CCDC170Q8IYT3 715 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 OPTNQ96CV9 577 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 CBWD1Q9BRT8 395 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 GANQ9H2C0 597 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 HDAC6Q9UBN7 1215 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 SEPT9Q9UHD8 586 aaPredicted RBP15.91■□□□□ 0.14
CLIP1-216ENST00000541410 PUF60Q9UHX1 559 aaKnown RBP15.91■□□□□ 0.14
CLIP1-216ENST00000541410 MCM3APO60318 1980 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 A0A0G2JLL6 359 aaPredicted RBP15.91■□□□□ 0.14
CLIP1-216ENST00000541410 CTAGE9A4FU28 777 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 EXOC3O60645 756 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 NF2P35240 595 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 PPP2R3AQ06190 1150 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 MKRN3Q13064 507 aaKnown RBP15.91■□□□□ 0.14
CLIP1-216ENST00000541410 SPA17Q15506 151 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 GPR162Q16538 588 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 STXBP4Q6ZWJ1 553 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 HAUS6Q7Z4H7 955 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 PRRT2Q7Z6L0 340 aaPredicted RBP15.91■□□□□ 0.14
CLIP1-216ENST00000541410 ERO1BQ86YB8 467 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 BORCS6Q96GS4 357 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 STRA6Q9BX79 667 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 IFIH1Q9BYX4 1025 aaKnown RBP15.91■□□□□ 0.14
CLIP1-216ENST00000541410 GCNT4Q9P109 453 aa15.91■□□□□ 0.14
CLIP1-216ENST00000541410 LYPLA2O95372 231 aa15.9■□□□□ 0.14
CLIP1-216ENST00000541410 ALDH5A1P51649 535 aaPredicted RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms