RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 LIG3P49916 1009 aa13.68□□□□□ -0.22
RNF4-222ENST00000541204 MMP14P50281 582 aa13.68□□□□□ -0.22
RNF4-222ENST00000541204 LDHDQ86WU2 507 aa13.68□□□□□ -0.22
RNF4-222ENST00000541204 CHURC1Q8WUH1 139 aa13.68□□□□□ -0.22
RNF4-222ENST00000541204 PIK3R5Q8WYR1 880 aa13.68□□□□□ -0.22
RNF4-222ENST00000541204 DYDC2Q96IM9 177 aa13.68□□□□□ -0.22
RNF4-222ENST00000541204 GRID2IPA4D2P6 1211 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 TBX3O15119 743 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 ZEB2O60315 1214 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 NR2F2P24468 414 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 RASA3Q14644 834 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 DNAAF5Q86Y56 855 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 KLHL7Q8IXQ5 586 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 SYT2Q8N9I0 419 aaPredicted RBP13.67□□□□□ -0.22
RNF4-222ENST00000541204 INPP4AQ96PE3 977 aaPredicted RBP13.67□□□□□ -0.22
RNF4-222ENST00000541204 KCTD10Q9H3F6 313 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 RABGAP1Q9Y3P9 1069 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 ASTN2O75129 1339 aaPredicted RBP13.67□□□□□ -0.22
RNF4-222ENST00000541204 RAD51CO43502 376 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 GNA14O95837 355 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 ARP10275 920 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 ACTN1P12814 892 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 CIITAP33076 1130 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 ASIC2Q16515 512 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 PTPROQ16827 1216 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 KSR1Q8IVT5 923 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 FAM107BQ9H098 131 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 GOLPH3Q9H4A6 298 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 MYOZ2Q9NPC6 264 aa13.67□□□□□ -0.22
RNF4-222ENST00000541204 TULP1O00294 542 aaPredicted RBP13.66□□□□□ -0.22
RNF4-222ENST00000541204 PIK3CDO00329 1044 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 CLIC2O15247 247 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 GAS7O60861 476 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 TBCAO75347 108 aaKnown RBP13.66□□□□□ -0.22
RNF4-222ENST00000541204 GCNT3O95395 438 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 HOXA7P31268 230 aaPredicted RBP13.66□□□□□ -0.22
RNF4-222ENST00000541204 MARSP56192 900 aaKnown RBP13.66□□□□□ -0.22
RNF4-222ENST00000541204 KCNH2Q12809 1159 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 RNPC3Q96LT9 517 aaKnown RBP13.66□□□□□ -0.22
RNF4-222ENST00000541204 GANQ9H2C0 597 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 AIPL1Q9NZN9 384 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 NDUFAB1O14561 156 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 KCNK3O14649 394 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 BAG6P46379 1132 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 PTK2Q05397 1052 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 KCTD19Q17RG1 926 aaPredicted RBP13.66□□□□□ -0.22
RNF4-222ENST00000541204 OTOP1Q7RTM1 612 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 USP38Q8NB14 1042 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 JDP2Q8WYK2 163 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 RANBP17Q9H2T7 1088 aaKnown RBP13.66□□□□□ -0.22
RNF4-222ENST00000541204 CCPG1Q9ULG6 757 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 FZD1Q9UP38 647 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 ERLIN2O94905 339 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 CPP00450 1065 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 HOXD13P35453 343 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 GUCY1A3Q02108 690 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 DCAF17Q5H9S7 520 aaPredicted RBP13.66□□□□□ -0.22
RNF4-222ENST00000541204 MCTP2Q6DN12 878 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 MAEAQ7L5Y9 396 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 SAMD7Q7Z3H4 446 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 ZNF577Q9BSK1 485 aa13.66□□□□□ -0.22
RNF4-222ENST00000541204 NFIBO00712 420 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 SLITRK3O94933 977 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 SLC9A1P19634 815 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 ZC2HC1CQ53FD0 456 aaPredicted RBP13.65□□□□□ -0.22
RNF4-222ENST00000541204 TCERG1LQ5VWI1 586 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 CIAPIN1Q6FI81 312 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 PROCA1Q8NCQ7 364 aaPredicted RBP13.65□□□□□ -0.22
RNF4-222ENST00000541204 PIM2Q9P1W9 311 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 WRAP73Q9P2S5 460 aaPredicted RBP13.65□□□□□ -0.22
RNF4-222ENST00000541204 MRPL11Q9Y3B7 192 aaKnown RBP13.65□□□□□ -0.22
RNF4-222ENST00000541204 CETN3O15182 167 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 CYP3A4P08684 503 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 NMT1P30419 496 aaKnown RBP13.65□□□□□ -0.22
RNF4-222ENST00000541204 PLS1Q14651 629 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 CEP55Q53EZ4 464 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 PRAMEF18Q5VWM3 479 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 KDM7AQ6ZMT4 941 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 ZNF571Q7Z3V5 609 aaPredicted RBP13.65□□□□□ -0.22
RNF4-222ENST00000541204 MREGQ8N565 214 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 MYCT1Q8N699 235 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 BANK1Q8NDB2 785 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 AGBL3Q8NEM8 1001 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 TAF4BQ92750 862 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 HOOK2Q96ED9 719 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 SH2D3AQ9BRG2 576 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 GJA3Q9Y6H8 435 aa13.65□□□□□ -0.22
RNF4-222ENST00000541204 PITPNM2Q9BZ72 1349 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 FRMD3A2A2Y4 597 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 ASNSP08243 561 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 ALAS1P13196 640 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 RPS6KA1Q15418 735 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 KNOP1Q1ED39 458 aaKnown RBP13.64□□□□□ -0.23
RNF4-222ENST00000541204 TBC1D10BQ4KMP7 808 aaPredicted RBP13.64□□□□□ -0.23
RNF4-222ENST00000541204 RINT1Q6NUQ1 792 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 IRF2BP2Q7Z5L9 587 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 WHAMMQ8TF30 809 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 KAT2BQ92831 832 aa13.64□□□□□ -0.23
RNF4-222ENST00000541204 RAVER2Q9HCJ3 691 aaKnown RBP13.64□□□□□ -0.23
RNF4-222ENST00000541204 FAM170AA1A519 330 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms