RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 RASAL2Q9UJF2 1139 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 AJAP1Q9UKB5 411 aaPredicted RBP12.21□□□□□ -0.45
SYNE1-237ENST00000539504 PPP1R9AQ9ULJ8 1098 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 PCDHA2Q9Y5H9 948 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 EVI5O60447 810 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 TNFAIP3P21580 790 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 PSMC6P62333 389 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 MFSD14BQ5SR56 506 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 ERMNQ8TAM6 284 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 FAM129AQ9BZQ8 928 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 GGT7Q9UJ14 662 aa12.21□□□□□ -0.45
SYNE1-237ENST00000539504 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.21□□□□□ -0.46
SYNE1-237ENST00000539504 HGSO14964 777 aaPredicted RBP12.21□□□□□ -0.46
SYNE1-237ENST00000539504 RFC4P35249 363 aa12.21□□□□□ -0.46
SYNE1-237ENST00000539504 LRRC34Q8IZ02 419 aa12.21□□□□□ -0.46
SYNE1-237ENST00000539504 NAP1L3Q99457 506 aaPredicted RBP12.21□□□□□ -0.46
SYNE1-237ENST00000539504 REEP2Q9BRK0 252 aa12.21□□□□□ -0.46
SYNE1-237ENST00000539504 METTL14Q9HCE5 456 aaKnown RBP12.21□□□□□ -0.46
SYNE1-237ENST00000539504 DONSONQ9NYP3 566 aa12.21□□□□□ -0.46
SYNE1-237ENST00000539504 RSPH10B2B2RC85 870 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 UFL1O94874 794 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 RSPH10BP0C881 870 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 BYSLQ13895 437 aaKnown RBP12.2□□□□□ -0.46
SYNE1-237ENST00000539504 ARSHQ5FYA8 562 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 CHADLQ6NUI6 762 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 RPAINQ86UA6 219 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 CCT6BQ92526 530 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 ERP44Q9BS26 406 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 C5orf60A6NFR6 353 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 SLC29A2Q14542 456 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 CCDC38Q502W7 563 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 ERMARDQ5T6L9 678 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 BANK1Q8NDB2 785 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 FBXO25Q8TCJ0 367 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 PRMT1Q99873 361 aaKnown RBP12.2□□□□□ -0.46
SYNE1-237ENST00000539504 DLEC1Q9Y238 1755 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 PPP1R11O60927 126 aaPredicted RBP12.2□□□□□ -0.46
SYNE1-237ENST00000539504 IFI35P80217 286 aaPredicted RBP12.2□□□□□ -0.46
SYNE1-237ENST00000539504 IKQ13123 557 aaPredicted RBP12.2□□□□□ -0.46
SYNE1-237ENST00000539504 LLGL1Q15334 1064 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 EPHA7Q15375 998 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 RASGEF1CQ8N431 466 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 RFFLQ8WZ73 363 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 P3H4Q92791 437 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 KDM4CQ9H3R0 1056 aa12.2□□□□□ -0.46
SYNE1-237ENST00000539504 MTRF1LQ9UGC7 380 aaKnown RBP12.2□□□□□ -0.46
SYNE1-237ENST00000539504 ZNF335Q9H4Z2 1342 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-237ENST00000539504 SNED1Q8TER0 1413 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 A0A1B0GUA9 196 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 GNPATO15228 680 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 PAEPP09466 180 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 PRKCIP41743 596 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 ZNF543Q08ER8 600 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 KCNA1Q09470 495 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 DRAP1Q14919 205 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-237ENST00000539504 FAM228AQ86W67 206 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 TACO1Q9BSH4 297 aaKnown RBP12.19□□□□□ -0.46
SYNE1-237ENST00000539504 NSRP1Q9H0G5 558 aaKnown RBP12.19□□□□□ -0.46
SYNE1-237ENST00000539504 BHMT2Q9H2M3 363 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 NOD2Q9HC29 1040 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 CTTNBP2NLQ9P2B4 639 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 DNAJC12Q9UKB3 198 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 PCDHA1Q9Y5I3 950 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 LRRN2O75325 713 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 PPFIA2O75334 1257 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 LMNB1P20700 586 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 MAP2K1Q02750 393 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-237ENST00000539504 GIT2Q14161 759 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 KIAA1755Q5JYT7 1200 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 CATSPER3Q86XQ3 398 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 JAMLQ86YT9 394 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 FAM186BQ8IYM0 893 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 LNX1Q8TBB1 728 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-237ENST00000539504 HES6Q96HZ4 224 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 PABPC3Q9H361 631 aaKnown RBP12.19□□□□□ -0.46
SYNE1-237ENST00000539504 BCAS3Q9H6U6 928 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 PTPN22Q9Y2R2 807 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 TTLL1O95922 423 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 FGFR4P22455 802 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 ELF3P78545 371 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-237ENST00000539504 XRCC4Q13426 336 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 AADACL2Q6P093 401 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 RDH13Q8NBN7 331 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 SLC35C1Q96A29 364 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 ANO3Q9BYT9 981 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 IKZF4Q9H2S9 585 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 ERVK-5Q9HDB9 667 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 TYW1Q9NV66 732 aaKnown RBP12.19□□□□□ -0.46
SYNE1-237ENST00000539504 STXBP5LQ9Y2K9 1186 aa12.19□□□□□ -0.46
SYNE1-237ENST00000539504 GPR75-ASB3A0A0A6YYF3 556 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 PDXKO00764 312 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 ZBTB5O15062 677 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 FAM13AO94988 1023 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 ZNF76P36508 570 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 CYP2J2P51589 502 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 SLC12A3P55017 1021 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 PTENP60484 403 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 MYO1EQ12965 1108 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 LRRC14Q15048 493 aa12.18□□□□□ -0.46
SYNE1-237ENST00000539504 LACTB2Q53H82 288 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms