RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	RASSF10	A6NK89	507 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	TRAF5	O00463	557 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	ARHGAP6	O43182	974 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	IGSF3	O75054	1194 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	MPIG6B	O95866	241 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	F2	P00734	622 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	PRL	P01236	227 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	ZNF888	P0CJ79	500 aa	Predicted RBP	3.99	□□□□□ -1.77
CD44-238	ENST00000534296	POU3F2	P20265	443 aa	Predicted RBP	3.99	□□□□□ -1.77
CD44-238	ENST00000534296	BUD31	P41223	144 aa	Predicted RBP	3.99	□□□□□ -1.77
CD44-238	ENST00000534296	KPNA1	P52294	538 aa	Predicted RBP	3.99	□□□□□ -1.77
CD44-238	ENST00000534296	IL2	P60568	153 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	DGKD	Q16760	1214 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	TKFC	Q3LXA3	575 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	TM4SF20	Q53R12	229 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	FSTL4	Q6MZW2	842 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	LRSAM1	Q6UWE0	723 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	USP30	Q70CQ3	517 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	DHX37	Q8IY37	1157 aa	Known RBP	3.99	□□□□□ -1.77
CD44-238	ENST00000534296	GFM2	Q969S9	779 aa	Known RBP	3.99	□□□□□ -1.77
CD44-238	ENST00000534296	NEIL1	Q96FI4	390 aa	Predicted RBP	3.99	□□□□□ -1.77
CD44-238	ENST00000534296	MAML3	Q96JK9	1138 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	KRTAP4-11	Q9BYQ6	195 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	OR10A2	Q9H208	303 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	PPP4R1L	Q9P1A2	415 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	CDC42EP3	Q9UKI2	254 aa		3.99	□□□□□ -1.77
CD44-238	ENST00000534296	CDC14B	O60729	498 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	RAB11FIP3	O75154	756 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	APOL3	O95236	402 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	CNOT4	O95628	575 aa	Known RBP	3.98	□□□□□ -1.77
CD44-238	ENST00000534296	SLC9A1	P19634	815 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	CR2	P20023	1033 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	RPS19	P39019	145 aa	Known RBP	3.98	□□□□□ -1.77
CD44-238	ENST00000534296	SELENOP	P49908	381 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	MRE11	P49959	708 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	NFYC	Q13952	458 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	C21orf62-AS1	Q17RA5	79 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	AGBL4	Q5VU57	503 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	KLHDC10	Q6PID8	442 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	LIMS2	Q7Z4I7	341 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	FILIP1	Q7Z7B0	1213 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	3.98	□□□□□ -1.77
CD44-238	ENST00000534296	RTN4RL1	Q86UN2	441 aa	Predicted RBP	3.98	□□□□□ -1.77
CD44-238	ENST00000534296	DVL3	Q92997	716 aa	Predicted RBP	3.98	□□□□□ -1.77
CD44-238	ENST00000534296	FERMT2	Q96AC1	680 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	C8orf49	Q96NF6	230 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	RBM15	Q96T37	977 aa	Known RBP eCLIP	3.98	□□□□□ -1.77
CD44-238	ENST00000534296	OXSM	Q9NWU1	459 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	THG1L	Q9NWX6	298 aa	Known RBP	3.98	□□□□□ -1.77
CD44-238	ENST00000534296	KCMF1	Q9P0J7	381 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	USP36	Q9P275	1121 aa	Known RBP	3.98	□□□□□ -1.77
CD44-238	ENST00000534296	OAZ3	Q9UMX2	235 aa		3.98	□□□□□ -1.77
CD44-238	ENST00000534296	TLDC2	A0PJX2	215 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	PDE8A	O60658	829 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	HSD3B2	P26439	372 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	HHEX	Q03014	270 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	LRRC32	Q14392	662 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	PCOLCE	Q15113	449 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	MAN2A1	Q16706	1144 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	PLEKHG4	Q58EX7	1191 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	DALRD3	Q5D0E6	543 aa	Known RBP	3.97	□□□□□ -1.77
CD44-238	ENST00000534296	TRIM68	Q6AZZ1	485 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	OR5AN1	Q8NGI8	311 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	GCDH	Q92947	438 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-238	ENST00000534296	USP7	Q93009	1102 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	FOXRED1	Q96CU9	486 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-238	ENST00000534296	C16orf92	Q96LL3	132 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	ELF4	Q99607	663 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-238	ENST00000534296	TARS2	Q9BW92	718 aa	Known RBP	3.97	□□□□□ -1.77
CD44-238	ENST00000534296	KIAA1683	Q9H0B3	1180 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	MEGF9	Q9H1U4	602 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	TMX1	Q9H3N1	280 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	POLR3B	Q9NW08	1133 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-238	ENST00000534296	KCNG1	Q9UIX4	513 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	DENND2A	Q9ULE3	1009 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	MAPRE3	Q9UPY8	281 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	TBX22	Q9Y458	520 aa		3.97	□□□□□ -1.77
CD44-238	ENST00000534296	GOLGA8B	A8MQT2	603 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	KRTAP9-7	A8MTY7	169 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	DAPK3	O43293	454 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	MYCLP1	P12525	358 aa	Predicted RBP	3.96	□□□□□ -1.78
CD44-238	ENST00000534296	ATP2A2	P16615	1042 aa	Known RBP	3.96	□□□□□ -1.78
CD44-238	ENST00000534296	CPE	P16870	476 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	LSP1	P33241	339 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	SOX5	P35711	763 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	LSS	P48449	732 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	RGS3	P49796	1198 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	STAT5B	P51692	787 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	ADAM17	P78536	824 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	DSG1	Q02413	1049 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	ADCY2	Q08462	1091 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	RNF151	Q2KHN1	245 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	CT47A1	Q5JQC4	288 aa	Predicted RBP	3.96	□□□□□ -1.78
CD44-238	ENST00000534296	GPR158	Q5T848	1215 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	ESPNL	Q6ZVH7	1005 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	POLN	Q7Z5Q5	900 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	BMP8A	Q7Z5Y6	402 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	TAX1BP1	Q86VP1	789 aa		3.96	□□□□□ -1.78
CD44-238	ENST00000534296	LEO1	Q8WVC0	666 aa	Predicted RBP	3.96	□□□□□ -1.78
CD44-238	ENST00000534296	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	3.96	□□□□□ -1.78

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