RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CLIC2O15247 247 aa22.77■■□□□ 1.24
VPS28-209ENST00000528142 SNAPC2Q13487 334 aa22.77■■□□□ 1.24
VPS28-209ENST00000528142 TSR1Q2NL82 804 aaKnown RBP22.77■■□□□ 1.24
VPS28-209ENST00000528142 XKR9Q5GH70 373 aa22.77■■□□□ 1.24
VPS28-209ENST00000528142 SLC10A4Q96EP9 437 aa22.77■■□□□ 1.24
VPS28-209ENST00000528142 FAM207AQ9NSI2 230 aaPredicted RBP22.77■■□□□ 1.24
VPS28-209ENST00000528142 ARMCX3Q9UH62 379 aaPredicted RBP22.77■■□□□ 1.24
VPS28-209ENST00000528142 DKC1O60832 514 aaKnown RBP eCLIP22.76■■□□□ 1.23
VPS28-209ENST00000528142 CELF2O95319 508 aaKnown RBP22.76■■□□□ 1.23
VPS28-209ENST00000528142 HNRNPH3P31942 346 aaKnown RBP22.76■■□□□ 1.23
VPS28-209ENST00000528142 COPB2P35606 906 aa22.76■■□□□ 1.23
VPS28-209ENST00000528142 SWSAP1Q6NVH7 229 aa22.76■■□□□ 1.23
VPS28-209ENST00000528142 ZNF397Q8NF99 534 aaPredicted RBP22.76■■□□□ 1.23
VPS28-209ENST00000528142 EDEM3Q9BZQ6 932 aa22.76■■□□□ 1.23
VPS28-209ENST00000528142 METTL14Q9HCE5 456 aaKnown RBP22.76■■□□□ 1.23
VPS28-209ENST00000528142 DMAC2Q9NW81 257 aa22.76■■□□□ 1.23
VPS28-209ENST00000528142 CASP4P49662 377 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 CDK17Q00537 523 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 PPP2R3AQ06190 1150 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 KCNH2Q12809 1159 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 CCDC60Q8IWA6 550 aaPredicted RBP22.75■■□□□ 1.23
VPS28-209ENST00000528142 BORCS6Q96GS4 357 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 DRC1Q96MC2 740 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 CCDC43Q96MW1 224 aaKnown RBP22.75■■□□□ 1.23
VPS28-209ENST00000528142 ST6GALNAC4Q9H4F1 302 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 GBA2Q9HCG7 927 aaPredicted RBP22.75■■□□□ 1.23
VPS28-209ENST00000528142 ATG7O95352 703 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 ALCAMQ13740 583 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 CHADLQ6NUI6 762 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 SEPT14Q6ZU15 432 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 OTUD6AQ7L8S5 288 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 ACRBPQ8NEB7 543 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 BAP1Q92560 729 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 GBP3Q9H0R5 595 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 AGPAT3Q9NRZ7 376 aa22.75■■□□□ 1.23
VPS28-209ENST00000528142 EPN1Q9Y6I3 576 aaPredicted RBP22.75■■□□□ 1.23
VPS28-209ENST00000528142 K7ENM7 598 aa22.74■■□□□ 1.23
VPS28-209ENST00000528142 SUPT20HL2P0C7V6 817 aa22.74■■□□□ 1.23
VPS28-209ENST00000528142 EPB41P11171 864 aaKnown RBP22.74■■□□□ 1.23
VPS28-209ENST00000528142 MIS18BP1Q6P0N0 1132 aa22.74■■□□□ 1.23
VPS28-209ENST00000528142 TRMT1LQ7Z2T5 733 aaKnown RBP22.74■■□□□ 1.23
VPS28-209ENST00000528142 FGD4Q96M96 766 aa22.74■■□□□ 1.23
VPS28-209ENST00000528142 GPRC5CQ9NQ84 441 aa22.74■■□□□ 1.23
VPS28-209ENST00000528142 ZNHIT6Q9NWK9 470 aaKnown RBP22.74■■□□□ 1.23
VPS28-209ENST00000528142 PLAGL2Q9UPG8 496 aa22.74■■□□□ 1.23
VPS28-209ENST00000528142 PHLPP2Q6ZVD8 1323 aa22.74■■□□□ 1.23
VPS28-209ENST00000528142 A0A0U1RQJ8 604 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 FANCGO15287 622 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 NOL4O94818 638 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 NDUFA10O95299 355 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 SP4Q02446 784 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 CYFIP1Q7L576 1253 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 HS2ST1Q7LGA3 356 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 NEK11Q8NG66 645 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 GOLGA5Q8TBA6 731 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 ATRIPQ8WXE1 791 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 MKNK1Q9BUB5 465 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 IGSF9BQ9UPX0 1349 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 KIAA1217Q5T5P2 1943 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 DNAJC25-GNG10A0A024R161 153 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 SORBS3O60504 671 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 SLC9A9Q8IVB4 645 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 CEP170P1Q96L14 293 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 PDLIM7Q9NR12 457 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 DNAI1Q9UI46 699 aa22.73■■□□□ 1.23
VPS28-209ENST00000528142 REXO2Q9Y3B8 237 aaKnown RBP22.73■■□□□ 1.23
VPS28-209ENST00000528142 SYNGAP1Q96PV0 1343 aa22.72■■□□□ 1.23
VPS28-209ENST00000528142 XRCC5P13010 732 aaKnown RBP22.72■■□□□ 1.23
VPS28-209ENST00000528142 UBA1P22314 1058 aaKnown RBP22.72■■□□□ 1.23
VPS28-209ENST00000528142 PSMC2P35998 433 aaKnown RBP22.72■■□□□ 1.23
VPS28-209ENST00000528142 NCKAP1LP55160 1127 aa22.72■■□□□ 1.23
VPS28-209ENST00000528142 GTF2BQ00403 316 aa22.72■■□□□ 1.23
VPS28-209ENST00000528142 MYBPC2Q14324 1141 aa22.72■■□□□ 1.23
VPS28-209ENST00000528142 TMEM174Q8WUU8 243 aa22.72■■□□□ 1.23
VPS28-209ENST00000528142 SLC35C1Q96A29 364 aa22.72■■□□□ 1.23
VPS28-209ENST00000528142 TMEM206Q9H813 350 aa22.72■■□□□ 1.23
VPS28-209ENST00000528142 AFPP02771 609 aaKnown RBP22.71■■□□□ 1.23
VPS28-209ENST00000528142 PRKCEQ02156 737 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 FAM102BQ5T8I3 360 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 DPY19L2P1Q6NXN4 242 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 HAUS6Q7Z4H7 955 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 MS4A4AQ96JQ5 239 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 LSM14BQ9BX40 385 aaKnown RBP22.71■■□□□ 1.23
VPS28-209ENST00000528142 MROH8Q9H579 483 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 CEP72Q9P209 647 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 MAFBQ9Y5Q3 323 aaPredicted RBP22.71■■□□□ 1.23
VPS28-209ENST00000528142 TRPM7Q96QT4 1865 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 IGKV6D-21A0A0A0MT36 114 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 PGK2P07205 417 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 FKBP1BP68106 108 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 PDXDC1Q6P996 788 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 FAM186BQ8IYM0 893 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 CCDC170Q8IYT3 715 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 ACCSQ96QU6 501 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 CRACR2AQ9BSW2 395 aa22.71■■□□□ 1.23
VPS28-209ENST00000528142 NHEJ1Q9H9Q4 299 aaPredicted RBP22.71■■□□□ 1.23
VPS28-209ENST00000528142 LRRC53A6NM62 1247 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 TGFB3P10600 412 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 ATP4AP20648 1035 aa22.7■■□□□ 1.22
VPS28-209ENST00000528142 ARHGAP25P42331 645 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms