RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 RCAN1P53805 252 aa26.76■■□□□ 1.87
CPSF1-202ENST00000527827 DSC3Q14574 896 aa26.76■■□□□ 1.87
CPSF1-202ENST00000527827 CBX2Q14781 532 aaPredicted RBP26.76■■□□□ 1.87
CPSF1-202ENST00000527827 BMP2KLQ5H9B9 411 aa26.76■■□□□ 1.87
CPSF1-202ENST00000527827 SKAP1Q86WV1 359 aa26.76■■□□□ 1.87
CPSF1-202ENST00000527827 COLGALT1Q8NBJ5 622 aa26.76■■□□□ 1.87
CPSF1-202ENST00000527827 VN1R2Q8NFZ6 395 aa26.76■■□□□ 1.87
CPSF1-202ENST00000527827 BBXQ8WY36 941 aaPredicted RBP26.76■■□□□ 1.87
CPSF1-202ENST00000527827 ZNF577Q9BSK1 485 aa26.76■■□□□ 1.87
CPSF1-202ENST00000527827 CWH43Q9H720 699 aa26.76■■□□□ 1.87
CPSF1-202ENST00000527827 TMEM161AQ9NX61 479 aa26.76■■□□□ 1.87
CPSF1-202ENST00000527827 VTNP04004 478 aa26.75■■□□□ 1.87
CPSF1-202ENST00000527827 FGFR1P11362 822 aa26.75■■□□□ 1.87
CPSF1-202ENST00000527827 ADD1P35611 737 aaKnown RBP26.75■■□□□ 1.87
CPSF1-202ENST00000527827 MRE11P49959 708 aa26.75■■□□□ 1.87
CPSF1-202ENST00000527827 ZNF746Q6NUN9 644 aaPredicted RBP26.75■■□□□ 1.87
CPSF1-202ENST00000527827 CKAP2LQ8IYA6 745 aa26.75■■□□□ 1.87
CPSF1-202ENST00000527827 ZMYND12Q9H0C1 365 aa26.75■■□□□ 1.87
CPSF1-202ENST00000527827 TBC1D22BQ9NU19 505 aa26.75■■□□□ 1.87
CPSF1-202ENST00000527827 ESYT2A0FGR8 921 aa26.74■■□□□ 1.87
CPSF1-202ENST00000527827 FSCN2O14926 492 aa26.74■■□□□ 1.87
CPSF1-202ENST00000527827 DUSP6Q16828 381 aa26.74■■□□□ 1.87
CPSF1-202ENST00000527827 THNSL1Q8IYQ7 743 aa26.74■■□□□ 1.87
CPSF1-202ENST00000527827 ELAC1Q9H777 363 aaKnown RBP26.74■■□□□ 1.87
CPSF1-202ENST00000527827 ATP6V0A4Q9HBG4 840 aa26.74■■□□□ 1.87
CPSF1-202ENST00000527827 TRIM67Q6ZTA4 783 aa26.73■■□□□ 1.87
CPSF1-202ENST00000527827 TRMT1LQ7Z2T5 733 aaKnown RBP26.73■■□□□ 1.87
CPSF1-202ENST00000527827 BMP8AQ7Z5Y6 402 aa26.73■■□□□ 1.87
CPSF1-202ENST00000527827 SMAP1Q8IYB5 467 aaPredicted RBP26.73■■□□□ 1.87
CPSF1-202ENST00000527827 METTL13Q8N6R0 699 aa26.73■■□□□ 1.87
CPSF1-202ENST00000527827 SUSD6Q92537 303 aa26.73■■□□□ 1.87
CPSF1-202ENST00000527827 PHF7Q9BWX1 381 aaPredicted RBP26.73■■□□□ 1.87
CPSF1-202ENST00000527827 SETQ01105 290 aaPredicted RBP26.72■■□□□ 1.87
CPSF1-202ENST00000527827 KRT32Q14532 448 aa26.72■■□□□ 1.87
CPSF1-202ENST00000527827 PKN1Q16512 942 aa26.72■■□□□ 1.87
CPSF1-202ENST00000527827 CDCA3Q99618 268 aaPredicted RBP26.72■■□□□ 1.87
CPSF1-202ENST00000527827 RNF19AQ9NV58 838 aa26.72■■□□□ 1.87
CPSF1-202ENST00000527827 GABBR1Q9UBS5 961 aa26.72■■□□□ 1.87
CPSF1-202ENST00000527827 NAP1L2Q9ULW6 460 aaPredicted RBP26.72■■□□□ 1.87
CPSF1-202ENST00000527827 PCDHA10Q9Y5I2 948 aa26.72■■□□□ 1.87
CPSF1-202ENST00000527827 TMEM221A6NGB7 291 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 M0R296 226 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 PSAPP07602 524 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 LAG3P18627 525 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 METAP2P50579 478 aaKnown RBP eCLIP26.71■■□□□ 1.879e-6■□□□□ 8.1
CPSF1-202ENST00000527827 CLCN3P51790 818 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 ZXDAP98168 799 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 KCNC3Q14003 757 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 MCTP2Q6DN12 878 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 PDE12Q6L8Q7 609 aaKnown RBP26.71■■□□□ 1.87
CPSF1-202ENST00000527827 LRRC55Q6ZSA7 311 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 REXO1Q8N1G1 1221 aaKnown RBP26.71■■□□□ 1.87
CPSF1-202ENST00000527827 LINC01465Q8N7H1 131 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 C6orf50Q9HD87 102 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 LZTS1Q9Y250 596 aa26.71■■□□□ 1.87
CPSF1-202ENST00000527827 CPA1P15085 419 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 ATF7P17544 494 aaPredicted RBP26.7■■□□□ 1.86
CPSF1-202ENST00000527827 PLCB3Q01970 1234 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 APOBRQ0VD83 1088 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 PRR16Q569H4 304 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 MRPS27Q92552 414 aaKnown RBP26.7■■□□□ 1.86
CPSF1-202ENST00000527827 LENG9Q96B70 501 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 RPGRIP1Q96KN7 1286 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 CASD1Q96PB1 797 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 TMEM117Q9H0C3 514 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 ADAMTS10Q9H324 1103 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 CEP131Q9UPN4 1083 aa26.7■■□□□ 1.86
CPSF1-202ENST00000527827 FSD2A1L4K1 749 aa26.69■■□□□ 1.86
CPSF1-202ENST00000527827 MAGEB2O15479 319 aa26.69■■□□□ 1.86
CPSF1-202ENST00000527827 HMGB1P09429 215 aaKnown RBP26.69■■□□□ 1.86
CPSF1-202ENST00000527827 CIITAP33076 1130 aa26.69■■□□□ 1.86
CPSF1-202ENST00000527827 NLRP11P59045 1033 aaKnown RBP26.69■■□□□ 1.86
CPSF1-202ENST00000527827 PLPP4Q5VZY2 271 aa26.69■■□□□ 1.86
CPSF1-202ENST00000527827 TMEM184AQ6ZMB5 413 aa26.69■■□□□ 1.86
CPSF1-202ENST00000527827 CCDC196A0A1B0GTZ2 297 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 PRPF3O43395 683 aaKnown RBP26.68■■□□□ 1.86
CPSF1-202ENST00000527827 EDIL3O43854 480 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 EFCAB12Q6NXP0 572 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 LRRC71Q8N4P6 559 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 RASGRP4Q8TDF6 673 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 CCDC12Q8WUD4 166 aaPredicted RBP26.68■■□□□ 1.86
CPSF1-202ENST00000527827 PBXIP1Q96AQ6 731 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 S1PR5Q9H228 398 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 AKT3Q9Y243 479 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 NID2Q14112 1375 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 ZDBF2Q9HCK1 2354 aa26.68■■□□□ 1.86
CPSF1-202ENST00000527827 ZNF862O60290 1169 aa26.67■■□□□ 1.86
CPSF1-202ENST00000527827 IER5LQ5T953 404 aa26.67■■□□□ 1.86
CPSF1-202ENST00000527827 Q6ZUG5 572 aa26.67■■□□□ 1.86
CPSF1-202ENST00000527827 PRSS33Q8NF86 280 aa26.67■■□□□ 1.86
CPSF1-202ENST00000527827 FAM167AQ96KS9 214 aa26.67■■□□□ 1.86
CPSF1-202ENST00000527827 TCF25Q9BQ70 676 aa26.67■■□□□ 1.86
CPSF1-202ENST00000527827 TCEAL9Q9UHQ7 104 aa26.67■■□□□ 1.86
CPSF1-202ENST00000527827 SAMM50Q9Y512 469 aa26.67■■□□□ 1.86
CPSF1-202ENST00000527827 KMT2EQ8IZD2 1858 aa26.67■■□□□ 1.86
CPSF1-202ENST00000527827 HOXA2O43364 376 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 GNA11P29992 359 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 PBX3P40426 434 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 FGD1P98174 961 aa26.66■■□□□ 1.86
CPSF1-202ENST00000527827 ANKRD54Q6NXT1 300 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms