RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	RPL13	P26373	211 aa	Known RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	PPARD	Q03181	441 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	EPHA7	Q15375	998 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	COL23A1	Q86Y22	540 aa	Predicted RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	GOPC	Q9HD26	462 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	BAIAP2L1	Q9UHR4	511 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	CNOT7	Q9UIV1	285 aa	Known RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	DDX3X	O00571	662 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	TMEM253	P0C7T8	217 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	PLCG2	P16885	1265 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	HSPA6	P17066	643 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	CLK2	P49760	499 aa	Known RBP	11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	DIXDC1	Q155Q3	683 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	TRPM8	Q7Z2W7	1104 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	U2AF1L4	Q8WU68	220 aa	Known RBP	11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	TRIM31	Q9BZY9	425 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	EBF2	Q9HAK2	575 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	BATF3	Q9NR55	127 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	GCNT4	Q9P109	453 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	AFF2	P51816	1311 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	PLIN4	Q96Q06	1357 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	PNMA6F	A0A0J9YX94	578 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	SPDYE3	A6NKU9	549 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	STAT1	P42224	750 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	GALC	P54803	685 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	KIAA1755	Q5JYT7	1200 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	BTNL9	Q6UXG8	535 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	TAOK1	Q7L7X3	1001 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	GBP7	Q8N8V2	638 aa	Predicted RBP	11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	TMEM109	Q9BVC6	243 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	ZHX3	Q9H4I2	956 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	MTRF1L	Q9UGC7	380 aa	Known RBP	11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	TRPC6	Q9Y210	931 aa		11.13	□□□□□ -0.63
SPIDR-225	ENST00000524141	IRS2	Q9Y4H2	1338 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	POTEB3	A0JP26	581 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	POTEC	B2RU33	542 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	PDE6C	P51160	858 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	KLRC3	Q07444	240 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	MAPK7	Q13164	816 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	TCERG1L	Q5VWI1	586 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	POTEB	Q6S5H4	581 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	TXNRD3	Q86VQ6	643 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	MAB21L3	Q8N8X9	362 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	TRIM6	Q9C030	488 aa	Predicted RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	GLT8D2	Q9H1C3	349 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	EPB41L4B	Q9H329	900 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	SIX2	Q9NPC8	291 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	FRMPD2	Q68DX3	1309 aa	Predicted RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	SYNGAP1	Q96PV0	1343 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	ARFGEF1	Q9Y6D6	1849 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	NPHP3-ACAD11	A0A0J9YXS1	232 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	DDX3Y	O15523	660 aa	Known RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	IBSP	P21815	317 aa	Predicted RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	SLC12A3	P55017	1021 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	PRPF4B	Q13523	1007 aa	Known RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	JAML	Q86YT9	394 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	LRRC34	Q8IZ02	419 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	SLC35G2	Q8TBE7	412 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	TCP11	Q8WWU5	503 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	DHX36	Q9H2U1	1008 aa	Known RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	ADAM7	Q9H2U9	754 aa		11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	TYW1	Q9NV66	732 aa	Known RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	COL5A3	P25940	1745 aa	Predicted RBP	11.12	□□□□□ -0.63
SPIDR-225	ENST00000524141	TULP1	O00294	542 aa	Predicted RBP	11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	PODXL	O00592	558 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	SHBG	P04278	402 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	VIM	P08670	466 aa	Known RBP	11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	SNHG28	P0DPA3	235 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	ZNF131	P52739	623 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	PLTP	P55058	493 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	CACNB1	Q02641	598 aa	Predicted RBP	11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	PPAT	Q06203	517 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	ZNF268	Q14587	947 aa	Predicted RBP	11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	SLFN12	Q8IYM2	578 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	SLC30A5	Q8TAD4	765 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	TBC1D22A	Q8WUA7	517 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.11	□□□□□ -0.63	2e-7	■□□□□ 8.8
SPIDR-225	ENST00000524141	TBC1D31	Q96DN5	1066 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	PLCD4	Q9BRC7	762 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	TLDC2	A0PJX2	215 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	PPP1R12B	O60237	982 aa	Predicted RBP	11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	EVI5	O60447	810 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	CLTA	P09496	248 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	CHRNA3	P32297	505 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	SOX5	P35711	763 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	PLS1	Q14651	629 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	NAA25	Q14CX7	972 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	UBE2S	Q16763	222 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	BMT2	Q1RMZ1	405 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	EPM2AIP1	Q7L775	607 aa	Predicted RBP	11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	PNMA8A	Q86V59	439 aa	Predicted RBP	11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	DNAAF5	Q86Y56	855 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	ERMN	Q8TAM6	284 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	SLC35C1	Q96A29	364 aa		11.11	□□□□□ -0.63
SPIDR-225	ENST00000524141	ELAC2	Q9BQ52	826 aa	Known RBP	11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms