RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 NIFKQ9BYG3 293 aaKnown RBP17.07■□□□□ 0.32
LSM1-203ENST00000520755 PPP1R12CQ9BZL4 782 aa17.07■□□□□ 0.32
LSM1-203ENST00000520755 TBX21Q9UL17 535 aa17.07■□□□□ 0.32
LSM1-203ENST00000520755 TANC1Q9C0D5 1861 aa17.07■□□□□ 0.32
LSM1-203ENST00000520755 TRIM43BA6NCK2 446 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 EYA4O95677 639 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 MBD3O95983 291 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 KLRC1P26715 233 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 SLC12A3P55017 1021 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 NPEPPSP55786 919 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 PTK7Q13308 1070 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 MCM6Q14566 821 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 MTHFD1LQ6UB35 978 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 RUFY4Q6ZNE9 571 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 KRBA2Q6ZNG9 492 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 OTUD6AQ7L8S5 288 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 SERINC5Q86VE9 423 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 GRAMD1CQ8IYS0 662 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 IQUBQ8NA54 791 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 LARP4BQ92615 738 aaKnown RBP17.06■□□□□ 0.32
LSM1-203ENST00000520755 DHX38Q92620 1227 aaKnown RBP17.06■□□□□ 0.32
LSM1-203ENST00000520755 WNT8BQ93098 351 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 TRIM43Q96BQ3 446 aaPredicted RBP17.06■□□□□ 0.32
LSM1-203ENST00000520755 CEP170P1Q96L14 293 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 CCDC43Q96MW1 224 aaKnown RBP17.06■□□□□ 0.32
LSM1-203ENST00000520755 NACC1Q96RE7 527 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 CEP89Q96ST8 783 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 HIPK3Q9H422 1215 aa17.06■□□□□ 0.32
LSM1-203ENST00000520755 MBLAC1A4D2B0 266 aaPredicted RBP17.05■□□□□ 0.32
LSM1-203ENST00000520755 KIAA0355O15063 1070 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 C22orf31O95567 290 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 SLFN14P0C7P3 912 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 PRR29P0C7W0 189 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 PLA2G4BP0C869 781 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 RAG1P15918 1043 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 RARRES1P49788 294 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 TARBP2Q15633 366 aaKnown RBP17.05■□□□□ 0.32
LSM1-203ENST00000520755 XKR9Q5GH70 373 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 CCDC155Q8N6L0 562 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 STAMQ92783 540 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 NOC4LQ9BVI4 516 aaKnown RBP17.05■□□□□ 0.32
LSM1-203ENST00000520755 FAM49AQ9H0Q0 323 aaPredicted RBP17.05■□□□□ 0.32
LSM1-203ENST00000520755 BHMT2Q9H2M3 363 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 CYP26B1Q9NR63 512 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 KBTBD4Q9NVX7 518 aa17.05■□□□□ 0.32
LSM1-203ENST00000520755 DBR1Q9UK59 544 aaKnown RBP17.05■□□□□ 0.32
LSM1-203ENST00000520755 SCN5AQ14524 2016 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 UMODL1Q5DID0 1318 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 PTMSP20962 102 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 CYP2C18P33260 490 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 THPOP40225 353 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 TBC1D8BQ0IIM8 1120 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 BFSP2Q13515 415 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 KLHL40Q2TBA0 621 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 KCTD17Q8N5Z5 321 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 METTL13Q8N6R0 699 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 TIGD1Q96MW7 591 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 PYM1Q9BRP8 204 aaKnown RBP17.04■□□□□ 0.32
LSM1-203ENST00000520755 RUSC1Q9BVN2 902 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 CUEDC2Q9H467 287 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 BMP2KQ9NSY1 1161 aaPredicted RBP17.04■□□□□ 0.32
LSM1-203ENST00000520755 ANKEF1Q9NU02 776 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 USP25Q9UHP3 1055 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 DNM3Q9UQ16 869 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 PCDHA2Q9Y5H9 948 aa17.04■□□□□ 0.32
LSM1-203ENST00000520755 MAGEB2O15479 319 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 KINO60870 393 aaKnown RBP17.03■□□□□ 0.32
LSM1-203ENST00000520755 XRCC6P12956 609 aaKnown RBP eCLIP17.03■□□□□ 0.32
LSM1-203ENST00000520755 ITGB8P26012 769 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 CASP1P29466 404 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 TAF2Q6P1X5 1199 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 LRRC71Q8N4P6 559 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 SYT2Q8N9I0 419 aaPredicted RBP17.03■□□□□ 0.32
LSM1-203ENST00000520755 RETREG2Q8NC44 543 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 CNNM3Q8NE01 707 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 CAGE1Q8TC20 777 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 DNAJB3Q8WWF6 145 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 PAGE5Q96GU1 130 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 TNMDQ9H2S6 317 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 CLSTN2Q9H4D0 955 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 SUGCTQ9HAC7 445 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 MAGEF1Q9HAY2 307 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 TMEM63CQ9P1W3 806 aa17.03■□□□□ 0.32
LSM1-203ENST00000520755 MYMKA6NI61 221 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 H0YGN5 161 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 TIMP1P01033 207 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 CTSHP09668 335 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 CKBP12277 381 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 CYP11B2P19099 503 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 AFMP43652 599 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 CLCN3P51790 818 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 POLGP54098 1239 aaPredicted RBP17.02■□□□□ 0.32
LSM1-203ENST00000520755 CCL23P55773 120 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 MDM2Q00987 491 aaPredicted RBP17.02■□□□□ 0.32
LSM1-203ENST00000520755 DHX8Q14562 1220 aaKnown RBP17.02■□□□□ 0.32
LSM1-203ENST00000520755 TRIM71Q2Q1W2 868 aaKnown RBP17.02■□□□□ 0.32
LSM1-203ENST00000520755 ARSHQ5FYA8 562 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 EFCAB12Q6NXP0 572 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 CEP57L1Q8IYX8 460 aa17.02■□□□□ 0.32
LSM1-203ENST00000520755 SMIM35A0A1B0GVV1 85 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms