RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 C7orf31Q8N865 590 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 XXYLT1Q8NBI6 393 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 SLC4A9Q96Q91 983 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 LACRTQ9GZZ8 138 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 ZMYND12Q9H0C1 365 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 TYW1Q9NV66 732 aaKnown RBP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 MAD2L2Q9UI95 211 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 A0A087X0B3 334 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 WDR91A4D1P6 747 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 H7C0C1 242 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 ATP5OP48047 213 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 KRT81Q14533 505 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 FAM133BQ5BKY9 247 aaKnown RBP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 SRLQ86TD4 932 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 TADA2BQ86TJ2 420 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 NEK9Q8TD19 979 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 GJD4Q96KN9 370 aaPredicted RBP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 NLRP4Q96MN2 994 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 FAM213AQ9BRX8 229 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 NRBP2Q9NSY0 501 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 MAGED2Q9UNF1 606 aaPredicted RBP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 SETSIPP0DME0 302 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 KCNJ6P48051 423 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 PRELPP51888 382 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 YWHAGP61981 247 aaKnown RBP eCLIP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 EVX2Q03828 476 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 NAALADL2Q58DX5 795 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 C10orf76Q5T2E6 689 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 REEP2Q9BRK0 252 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 ANAPC5Q9UJX4 755 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 OVOS2A0A0G2JMS6 1433 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 RASGRF2O14827 1237 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 PSMC4P43686 418 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 APBA1Q02410 837 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 HADHQ16836 314 aaKnown RBP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 CCDC93Q567U6 631 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 WHAMMQ8TF30 809 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 ADAM33Q9BZ11 813 aa12.62□□□□□ -0.39
SYNPO-204ENST00000519664 CNOT8Q9UFF9 292 aaKnown RBP12.62□□□□□ -0.39
SYNPO-204ENST00000519664 GUCY2CP25092 1073 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 MKRN3Q13064 507 aaKnown RBP12.61□□□□□ -0.39
SYNPO-204ENST00000519664 PDIA5Q14554 519 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 SULF1Q8IWU6 871 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 TTC7AQ9ULT0 858 aaPredicted RBP12.61□□□□□ -0.39
SYNPO-204ENST00000519664 ZHX2Q9Y6X8 837 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 DENND3A2RUS2 1198 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 MYBP10242 640 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 SAT1P21673 171 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 ALS2CLQ60I27 953 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 C16orf86Q6ZW13 317 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 RPUSD2Q8IZ73 545 aaKnown RBP12.61□□□□□ -0.39
SYNPO-204ENST00000519664 GRK7Q8WTQ7 553 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 FAM149B1Q96BN6 582 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 C7orf25Q9BPX7 421 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 ODF2LQ9ULJ1 636 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 ITSN1Q15811 1721 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 EMSYQ7Z589 1322 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 KRT14P02533 472 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 PMS1P54277 932 aaKnown RBP12.61□□□□□ -0.39
SYNPO-204ENST00000519664 SESN3P58005 492 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 BPIFB4P59827 614 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 TMED2Q15363 201 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 GEN1Q17RS7 908 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 MUM1L1Q5H9M0 696 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 DDX42Q86XP3 938 aaKnown RBP eCLIP12.61□□□□□ -0.39
SYNPO-204ENST00000519664 SP8Q8IXZ3 490 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 PNKPQ96T60 521 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 JPH2Q9BR39 696 aaPredicted RBP12.61□□□□□ -0.39
SYNPO-204ENST00000519664 C11orf70Q9BRQ4 267 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 ANAPC4Q9UJX5 808 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 NOD1Q9Y239 953 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 ZNF233A6NK53 670 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 RPSAP08865 295 aaKnown RBP12.61□□□□□ -0.39
SYNPO-204ENST00000519664 TAL1P17542 331 aaPredicted RBP12.61□□□□□ -0.39
SYNPO-204ENST00000519664 LDHDQ86WU2 507 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 CXorf56Q9H5V9 222 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 FHOD1Q9Y613 1164 aa12.61□□□□□ -0.39
SYNPO-204ENST00000519664 KLRC1P26715 233 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 MAGOHP61326 146 aaKnown RBP12.6□□□□□ -0.39
SYNPO-204ENST00000519664 CEP55Q53EZ4 464 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 PRAMEF18Q5VWM3 479 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 CIAPIN1Q6FI81 312 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 GJB7Q6PEY0 223 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 RNF25Q96BH1 459 aaPredicted RBP12.6□□□□□ -0.39
SYNPO-204ENST00000519664 RBM12Q9NTZ6 932 aaKnown RBP12.6□□□□□ -0.39
SYNPO-204ENST00000519664 TRIM66O15016 1216 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 SLC8A1P32418 973 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 USP11P51784 963 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 GUCY1A3Q02108 690 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 SWSAP1Q6NVH7 229 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 FAM160B2Q86V87 743 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 RNF10Q8N5U6 811 aaKnown RBP12.6□□□□□ -0.39
SYNPO-204ENST00000519664 CCDC197Q8NCU1 140 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 L2HGDHQ9H9P8 463 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 SEPT10Q9P0V9 454 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 KCNG1Q9UIX4 513 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 FRMD3A2A2Y4 597 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 UCHL3P15374 230 aa12.6□□□□□ -0.39
SYNPO-204ENST00000519664 POLR2BP30876 1174 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 446.3 ms