RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 BTG4Q9NY30 223 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAP3K20Q9NYL2 800 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ACTR10Q9NZ32 417 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 DTLQ9NZJ0 730 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZIM2Q9NZV7 527 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MARCH2Q9P0N8 246 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PTGFRNQ9P2B2 879 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ARHGAP20Q9P2F6 1191 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MYOTQ9UBF9 498 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ASH2LQ9UBL3 628 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADAMTS1Q9UHI8 967 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 USP25Q9UHP3 1055 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNHIT2Q9UHR6 403 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NRBP1Q9UHY1 535 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMEFF2Q9UIK5 374 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RCAN3Q9UKA8 241 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF214Q9UL59 606 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZBTB21Q9ULJ3 1066 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNRF3Q9ULT6 936 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 DMTF1Q9Y222 760 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TLR6Q9Y2C9 796 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF281Q9Y2X9 895 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 VWA7Q9Y334 891 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MRPS23Q9Y3D9 190 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RWDD3Q9Y3V2 267 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NR2E1Q9Y466 385 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CD2APQ9Y5K6 639 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPP2R3BQ9Y5P8 575 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 HS3ST3A1Q9Y663 406 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PTCH2Q9Y6C5 1203 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RPS6KL1Q9Y6S9 549 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PHLDB1Q86UU1 1377 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 A0A1W2PRX2 142 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SHTN1A0MZ66 631 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM82A0PJX8 343 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 BICDL2A1A5D9 508 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GAGE12BA1L429 117 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 C7orf72A4D263 438 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC151A5D8V7 595 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GAGE12HA6NDE8 117 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GSG1L2A8MUP6 293 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CAPN14A8MX76 684 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PATE3B3GLJ2 98 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRRT4C9JH25 899 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PROB1E7EW31 1015 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 STXBP3O00186 592 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRAF5O00463 557 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TCERG1O14776 1098 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 FFAR3O14843 346 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLD2O14939 933 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ERC2O15083 957 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 MATN3O15232 486 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ANP32CO43423 234 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 AKAP10O43572 662 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TIMM44O43615 452 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 B3GALT2O43825 422 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRICKLE3O43900 615 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZEB2O60315 1214 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 NRP2O60462 931 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 DIAPH1O60610 1272 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PDE8AO60658 829 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 EFCAB14O75071 495 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRRN2O75325 713 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 KATNA1O75449 491 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TCEA3O75764 348 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 RAD17O75943 681 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 DDAH1O94760 285 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 UBOX5O94941 541 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZFPL1O95159 310 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 KCNH1O95259 989 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 RAPGEF3O95398 923 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GJB6O95452 261 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ABHD16AO95870 558 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 SCGB1D2O95969 90 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 NUDT3O95989 172 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 F2P00734 622 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 HMGCRP04035 888 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 PTMAP06454 111 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ITGAVP06756 1048 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 THBDP07204 575 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 LDHCP07864 332 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 HSP90AB1P08238 724 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 VDRP11473 427 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM27P14373 513 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 HOXB6P17509 224 aaKnown RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 TYRP1P17643 537 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GNAT2P19087 354 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 VCAM1P19320 739 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 POU3F3P20264 500 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 POU3F2P20265 443 aaPredicted RBP0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 GARTP22102 1010 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ACRV1P26436 265 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 POLD1P28340 1107 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CYP2C19P33261 490 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 ACVRL1P37023 503 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CRKP46108 304 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCT5P48643 541 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAN2A2P49641 1150 aa0.71□□□□□ -2.3
RNU4-54P-201ENST00000516428 NEK2P51955 445 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms