RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 HOXA7P31268 230 aaPredicted RBP13.64□□□□□ -0.23
USP53-209ENST00000514665 MSH2P43246 934 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 KLK7P49862 253 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 PRELPP51888 382 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 MTMR1Q13613 665 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 PHLDB3Q6NSJ2 640 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 AKT3Q9Y243 479 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 C1orf167Q5SNV9 1468 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 CAMSAP1Q5T5Y3 1602 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 RHOBTB3O94955 611 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 MMEP08473 750 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 GPC5P78333 572 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 RNF207Q6ZRF8 634 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 RPUSD2Q8IZ73 545 aaKnown RBP13.64□□□□□ -0.23
USP53-209ENST00000514665 NLRP4Q96MN2 994 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 C11orf70Q9BRQ4 267 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 RAVER2Q9HCJ3 691 aaKnown RBP13.64□□□□□ -0.23
USP53-209ENST00000514665 TTC7AQ9ULT0 858 aaPredicted RBP13.64□□□□□ -0.23
USP53-209ENST00000514665 ABCB11O95342 1321 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 CEP170BQ9Y4F5 1589 aaPredicted RBP13.64□□□□□ -0.23
USP53-209ENST00000514665 A6NJR5 290 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 ACTN1P12814 892 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 C6orf118Q5T5N4 469 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 ZNF449Q6P9G9 518 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 PODNQ7Z5L7 613 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 TADA2BQ86TJ2 420 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 SAAL1Q96ER3 474 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 CDHR1Q96JP9 859 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 ZNF512BQ96KM6 892 aaPredicted RBP13.64□□□□□ -0.23
USP53-209ENST00000514665 MSTO1Q9BUK6 570 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 MIS12Q9H081 205 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 MTMR4Q9NYA4 1195 aa13.64□□□□□ -0.23
USP53-209ENST00000514665 IPO5O00410 1097 aaKnown RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 GCKP35557 465 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 HDLBPQ00341 1268 aaKnown RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 SF3B3Q15393 1217 aaKnown RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 MIS18BP1Q6P0N0 1132 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 CCNYQ8ND76 341 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 MASTLQ96GX5 879 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 ADGRB1O14514 1584 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 ABCA9Q8IUA7 1624 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 MIF4GDA9UHW6 222 aaKnown RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 MCF2LO15068 1137 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 MT-ND3P03897 115 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 GABPB2Q8TAK5 448 aaPredicted RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 RNF25Q96BH1 459 aaPredicted RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 ANKRD36BP1Q96IX9 119 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 FAM213AQ9BRX8 229 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 CNTNAP5Q8WYK1 1306 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 MAGEA9P43362 315 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 HP1BP3Q5SSJ5 553 aaPredicted RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 OR6B2Q6IFH4 312 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 RINT1Q6NUQ1 792 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 TMED8Q6PL24 325 aaPredicted RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 ARHGAP27Q6ZUM4 889 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 SRRM1Q8IYB3 904 aaKnown RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 SCYL1Q96KG9 808 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 EIF2AK1Q9BQI3 630 aaKnown RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 M0QZ92 97 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 ABL1P00519 1130 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 GUCY2CP25092 1073 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 DARS2Q6PI48 645 aaKnown RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 REXO1L1PQ8IX06 675 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 CFAP57Q96MR6 1250 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 TAF1DQ9H5J8 278 aaPredicted RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 ZWILCHQ9H900 591 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 NGRNQ9NPE2 291 aaKnown RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 SMYD2Q9NRG4 433 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 NOC2LQ9Y3T9 749 aaKnown RBP13.63□□□□□ -0.23
USP53-209ENST00000514665 AFG3L2Q9Y4W6 797 aa13.63□□□□□ -0.23
USP53-209ENST00000514665 DENND3A2RUS2 1198 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 PODXLO00592 558 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 GABPAQ06546 454 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 ADCY2Q08462 1091 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 ARMC9Q7Z3E5 817 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 GIMAP8Q8ND71 665 aaPredicted RBP13.62□□□□□ -0.23
USP53-209ENST00000514665 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP53-209ENST00000514665 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP53-209ENST00000514665 DAGLAQ9Y4D2 1042 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 IQGAP1P46940 1657 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 SYNGAP1Q96PV0 1343 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 PPP1R3GB7ZBB8 358 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 PSAPP07602 524 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 RASA1P20936 1047 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 VAMP7P51809 220 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 IRX4P78413 519 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 GUCY1A3Q02108 690 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 TFDP1Q14186 410 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 PDIA5Q14554 519 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 CDO1Q16878 200 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 Q3C1V9 767 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 AFAP1L2Q8N4X5 818 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 KCTD6Q8NC69 237 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 ZNF668Q96K58 619 aaPredicted RBP13.62□□□□□ -0.23
USP53-209ENST00000514665 LXNQ9BS40 222 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 SAYSD1Q9NPB0 183 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 FBXL5Q9UKA1 691 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 CD44P16070 742 aaKnown RBP13.62□□□□□ -0.23
USP53-209ENST00000514665 CCND2P30279 289 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 ZNF543Q08ER8 600 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms