RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 DDX12PQ92771 950 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 SAAL1Q96ER3 474 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 PNMA5Q96PV4 448 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 NOP53Q9NZM5 478 aaKnown RBP10.47□□□□□ -0.73
VCAN-210ENST00000513960 POLRMTO00411 1230 aaKnown RBP10.47□□□□□ -0.73
VCAN-210ENST00000513960 CAND2O75155 1236 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 CLSTN1O94985 981 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 FGGP02679 453 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 SNHG28P0DPA3 235 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 CUL1Q13616 776 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 ZSCAN29Q8IWY8 852 aaPredicted RBP10.47□□□□□ -0.73
VCAN-210ENST00000513960 GDAP1Q8TB36 358 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 ISCUQ9H1K1 167 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 NEUROG2Q9H2A3 272 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 ATP6V0A4Q9HBG4 840 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 PLCB1Q9NQ66 1216 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 PLIN4Q96Q06 1357 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 AFF2P51816 1311 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 ZBTB5O15062 677 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 EVI5O60447 810 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 PDHA1P08559 390 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 ACTN1P12814 892 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 HSPA9P38646 679 aaKnown RBP10.46□□□□□ -0.73
VCAN-210ENST00000513960 ATP11AP98196 1134 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 LRRC63Q05C16 580 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 TAF11Q15544 211 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 COBLL1Q53SF7 1204 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 RNF10Q8N5U6 811 aaKnown RBP10.46□□□□□ -0.73
VCAN-210ENST00000513960 GLIS3Q8NEA6 775 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 NAP1L4Q99733 375 aaKnown RBP10.46□□□□□ -0.73
VCAN-210ENST00000513960 MXD3Q9BW11 206 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 DNAJC17Q9NVM6 304 aaKnown RBP10.46□□□□□ -0.73
VCAN-210ENST00000513960 TRPC5Q9UL62 973 aaPredicted RBP10.46□□□□□ -0.73
VCAN-210ENST00000513960 SBF2Q86WG5 1849 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 USP17L10C9JJH3 530 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 RBM5P52756 815 aaKnown RBP eCLIP10.46□□□□□ -0.73
VCAN-210ENST00000513960 ITIH3Q06033 890 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 PSMD2Q13200 908 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 MYOCDQ8IZQ8 938 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 CCDC17Q96LX7 622 aa10.46□□□□□ -0.73
VCAN-210ENST00000513960 MYH1P12882 1939 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 A0A1W2PQJ5 194 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 H0Y3Z8 333 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 C21orf2O43822 256 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 SESN3P58005 492 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 HERC4Q5GLZ8 1057 aaPredicted RBP10.46□□□□□ -0.74
VCAN-210ENST00000513960 FIGNQ5HY92 759 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 FAM228AQ86W67 206 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 PPP1R12CQ9BZL4 782 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 NT5C3AQ9H0P0 336 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 GLT8D2Q9H1C3 349 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 ECT2Q9H8V3 914 aa10.46□□□□□ -0.74
VCAN-210ENST00000513960 ALDH1B1P30837 517 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 HOXA7P31268 230 aaPredicted RBP10.45□□□□□ -0.74
VCAN-210ENST00000513960 CDC42EP5Q6NZY7 148 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 CERS5Q8N5B7 392 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 LMBR1Q8WVP7 490 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 NUDT12Q9BQG2 462 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 TAF1LQ8IZX4 1826 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 DDX60LQ5H9U9 1706 aaKnown RBP10.45□□□□□ -0.74
VCAN-210ENST00000513960 IGKV6D-41A0A0C4DH26 115 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 GRID2IPA4D2P6 1211 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 BRD2P25440 801 aaKnown RBP10.45□□□□□ -0.74
VCAN-210ENST00000513960 SHMT1P34896 483 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 IKQ13123 557 aaPredicted RBP10.45□□□□□ -0.74
VCAN-210ENST00000513960 AGAP11Q8TF27 550 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 TATDN2Q93075 761 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 GJA10Q969M2 543 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 PTPN22Q9Y2R2 807 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 COL4A3BPQ9Y5P4 624 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 MYO3BQ8WXR4 1341 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 KDM3AQ9Y4C1 1321 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 IGF2BP3O00425 579 aaKnown RBP eCLIP10.45□□□□□ -0.74
VCAN-210ENST00000513960 KCNJ2P63252 427 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 TCP10Q12799 353 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 NAB2Q15742 525 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 UAP1Q16222 522 aaPredicted RBP10.45□□□□□ -0.74
VCAN-210ENST00000513960 NUGGCQ68CJ6 796 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 ALKBH5Q6P6C2 394 aaKnown RBP10.45□□□□□ -0.74
VCAN-210ENST00000513960 ARMC9Q7Z3E5 817 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.45□□□□□ -0.74
VCAN-210ENST00000513960 ABCF3Q9NUQ8 709 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 SIK3Q9Y2K2 1263 aa10.45□□□□□ -0.74
VCAN-210ENST00000513960 NPR1P16066 1061 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 HMGB2P26583 209 aaKnown RBP10.44□□□□□ -0.74
VCAN-210ENST00000513960 IRX1P78414 480 aaPredicted RBP10.44□□□□□ -0.74
VCAN-210ENST00000513960 SEPT2Q15019 361 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 FAM26FQ5R3K3 315 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 HHIPL2Q6UWX4 724 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 LRIG3Q6UXM1 1119 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 CCDC65Q8IXS2 484 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 METTL13Q8N6R0 699 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 PANK4Q9NVE7 773 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 KCNG1Q9UIX4 513 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 DBR1Q9UK59 544 aaKnown RBP10.44□□□□□ -0.74
VCAN-210ENST00000513960 TRPC6Q9Y210 931 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 PCDHA1Q9Y5I3 950 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 SMIM24O75264 130 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 AP1G2O75843 785 aa10.44□□□□□ -0.74
VCAN-210ENST00000513960 UBOX5O94941 541 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms