RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 TFDP1Q14186 410 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 HSP90AA2PQ14568 343 aaPredicted RBP9.42□□□□□ -0.9
PDGFC-205ENST00000506880 TRIM71Q2Q1W2 868 aaKnown RBP9.42□□□□□ -0.9
PDGFC-205ENST00000506880 MARCH8Q5T0T0 291 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 SRGAP1Q7Z6B7 1085 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 CABP7Q86V35 215 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 TRIM50Q86XT4 487 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 SYT2Q8N9I0 419 aaPredicted RBP9.42□□□□□ -0.9
PDGFC-205ENST00000506880 IQUBQ8NA54 791 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 TMEM87AQ8NBN3 555 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 PSPC1Q8WXF1 523 aaKnown RBP9.42□□□□□ -0.9
PDGFC-205ENST00000506880 DYDC2Q96IM9 177 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 ZFP91Q96JP5 570 aaPredicted RBP9.42□□□□□ -0.9
PDGFC-205ENST00000506880 CEP170P1Q96L14 293 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 MTRQ99707 1265 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 C2orf40Q9H1Z8 148 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 TNMDQ9H2S6 317 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 BCAS3Q9H6U6 928 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 BMP2KQ9NSY1 1161 aaPredicted RBP9.42□□□□□ -0.9
PDGFC-205ENST00000506880 SEL1LQ9UBV2 794 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 SEPT9Q9UHD8 586 aaPredicted RBP9.42□□□□□ -0.9
PDGFC-205ENST00000506880 ZDHHC9Q9Y397 364 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.42□□□□□ -0.9
PDGFC-205ENST00000506880 CLIC4Q9Y696 253 aa9.42□□□□□ -0.9
PDGFC-205ENST00000506880 ARHGEF35A5YM69 484 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 DDX11L8A8MPP1 907 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 MAPTP10636 758 aaKnown RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 CYP2C9P11712 490 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 CKBP12277 381 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 PTMSP20962 102 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 AXLP30530 894 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 ME1P48163 572 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 EFNA5P52803 228 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 CRYBB1P53674 252 aaPredicted RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 ATN1P54259 1190 aaPredicted RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 PSMC6P62333 389 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 MRPS6P82932 125 aaKnown RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 ALCAMQ13740 583 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 XKR9Q5GH70 373 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 PRPF38BQ5VTL8 546 aaKnown RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 RESP18Q5W5W9 173 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 LRRC8DQ7L1W4 858 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 APBB1IPQ7Z5R6 666 aaPredicted RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 BANK1Q8NDB2 785 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 LEO1Q8WVC0 666 aaPredicted RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 CCDC51Q96ER9 411 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 PRIMPOLQ96LW4 560 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 GBP4Q96PP9 640 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 CTAGE1Q96RT6 745 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 MMTAG2Q9BU76 263 aaKnown RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 TRAIPQ9BWF2 469 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 CHST12Q9NRB3 414 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 TSHZ2Q9NRE2 1034 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 SETD4Q9NVD3 440 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 RGL1Q9NZL6 768 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 LARSQ9P2J5 1176 aaKnown RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 HOOK1Q9UJC3 728 aaKnown RBP9.41□□□□□ -0.9
PDGFC-205ENST00000506880 MICAL3Q7RTP6 2002 aa9.41□□□□□ -0.9
PDGFC-205ENST00000506880 TTC3P53804 2025 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 ABHD14A-ACY1A0A1B0GW23 586 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 GOLGA6L4A6NEF3 574 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 RSPH10B2B2RC85 870 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 GOLGA6L22H0YM25 854 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 GPR182O15218 404 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 TREHO43280 583 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 MED24O75448 989 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 IQCF3P0C7M6 154 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 RSPH10BP0C881 870 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 SKIP12755 728 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 MARK3P27448 753 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 CYP4A11Q02928 519 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 DNM1Q05193 864 aaKnown RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 FPGSQ05932 587 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 NCBP1Q09161 790 aaKnown RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 NBR1Q14596 966 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 EMC2Q15006 297 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 IL17AQ16552 155 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 UGCGQ16739 394 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 AXDND1Q5T1B0 1012 aaPredicted RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 RRAGBQ5VZM2 374 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 EFCAB12Q6NXP0 572 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 TSHZ1Q6ZSZ6 1077 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 KIAA0319LQ8IZA0 1049 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 PIP4P2Q8N4L2 257 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 RASSF8Q8NHQ8 419 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 PHOSPHO2Q8TCD6 241 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 SPIRE2Q8WWL2 714 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 LARP4BQ92615 738 aaKnown RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 IFT74Q96LB3 600 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 NTPCRQ9BSD7 190 aaKnown RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 CELF4Q9BZC1 486 aaKnown RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 GCOM2Q9BZD3 368 aaPredicted RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 CSRNP2Q9H175 543 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 IL23AQ9NPF7 189 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 TRMT13Q9NUP7 481 aaKnown RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 DDX19AQ9NUU7 478 aaKnown RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 KIAA1024Q9UPX6 916 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 TRPV2Q9Y5S1 764 aa9.4□□□□□ -0.9
PDGFC-205ENST00000506880 TNRC18O15417 2968 aaPredicted RBP9.4□□□□□ -0.9
PDGFC-205ENST00000506880 GAP43P17677 238 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms