RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZMYND12Q9H0C1 365 aa23.81■■□□□ 1.4
SQSTM1-210ENST00000506042 TMEM117Q9H0C3 514 aa23.81■■□□□ 1.4
SQSTM1-210ENST00000506042 TMX1Q9H3N1 280 aa23.81■■□□□ 1.4
SQSTM1-210ENST00000506042 NGRNQ9NPE2 291 aaKnown RBP23.81■■□□□ 1.4
SQSTM1-210ENST00000506042 CCNE2O96020 404 aa23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 ATF7P17544 494 aaPredicted RBP23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 GTF2F1P35269 517 aaKnown RBP eCLIP23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 CAMK1Q14012 370 aa23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 KIZQ2M2Z5 673 aa23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 TYW1BQ6NUM6 668 aa23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 LRRC43Q8N309 656 aa23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 TMEM87AQ8NBN3 555 aa23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 OSMRQ99650 979 aa23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 ENTPD7Q9NQZ7 604 aa23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 BRPF3Q9ULD4 1205 aa23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 MAFBQ9Y5Q3 323 aaPredicted RBP23.8■■□□□ 1.4
SQSTM1-210ENST00000506042 C9IYK1 514 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 FAM86B1E9PN63 330 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 FAM86B2P0C5J1 330 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 SFNP31947 248 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 FUT2Q10981 343 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 CENPQQ7L2Z9 268 aaPredicted RBP23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 BMP8AQ7Z5Y6 402 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 ALYREFQ86V81 257 aaKnown RBP23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 COLGALT1Q8NBJ5 622 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 ZNF558Q96NG5 402 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 IRF2BPLQ9H1B7 796 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 DACT1Q9NYF0 836 aa23.79■■□□□ 1.4
SQSTM1-210ENST00000506042 C22orf31O95567 290 aa23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 HOXB8P17481 243 aaPredicted RBP23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 DNAJB1P25685 340 aa23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 PRR16Q569H4 304 aa23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 BLOC1S2Q6QNY1 142 aa23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 ADGRD2Q7Z7M1 963 aa23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 PBXIP1Q96AQ6 731 aa23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 MRPL9Q9BYD2 267 aaKnown RBP23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 GABBR1Q9UBS5 961 aa23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 USP15Q9Y4E8 981 aaPredicted RBP23.78■■□□□ 1.4
SQSTM1-210ENST00000506042 IGLV3-22A0A075B6J6 115 aa23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 PSMA5P28066 241 aa23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 DNM2P50570 870 aa23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 JAK3P52333 1124 aa23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 PLCB3Q01970 1234 aa23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 HFE2Q6ZVN8 426 aa23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 ZBTB33Q86T24 672 aa23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 MRPS27Q92552 414 aaKnown RBP23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 TCEANC2Q96MN5 208 aa23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 TYW1Q9NV66 732 aaKnown RBP23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 CLEC1BQ9P126 229 aa23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 BARX2Q9UMQ3 279 aaPredicted RBP23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 FNDC1Q4ZHG4 1894 aaPredicted RBP23.77■■□□□ 1.4
SQSTM1-210ENST00000506042 LOC730098B7Z3J9 87 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 DHX15O43143 795 aaKnown RBP23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 PRPF3O43395 683 aaKnown RBP23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 VTNP04004 478 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 GATMP50440 423 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 NHLH1Q02575 133 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 DUSP6Q16828 381 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 TPRNQ4KMQ1 711 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 EFCAB12Q6NXP0 572 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 TRIM67Q6ZTA4 783 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 TRMT1LQ7Z2T5 733 aaKnown RBP23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 FAM228AQ86W67 206 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 TRIM22Q8IYM9 498 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 FBXL18Q96ME1 805 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 NR2E1Q9Y466 385 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 PLXNA4Q9HCM2 1894 aa23.76■■□□□ 1.39
SQSTM1-210ENST00000506042 MGEA5O60502 916 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 GAS7O60861 476 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 SKIP12755 728 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 EIF4BP23588 611 aaKnown RBP23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 MRE11P49959 708 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 PTPN5P54829 565 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 NLRP11P59045 1033 aaKnown RBP23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 FAM189BP81408 668 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 TBC1D8BQ0IIM8 1120 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 FAM102BQ5T8I3 360 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 CES5AQ6NT32 575 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 RASGRP4Q8TDF6 673 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 CASP10Q92851 521 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 RPGRIP1Q96KN7 1286 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 PPP1R16BQ96T49 567 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 RIT2Q99578 217 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 TCF25Q9BQ70 676 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 TEKT3Q9BXF9 490 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 RNF26Q9BY78 433 aaPredicted RBP23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 INO80BQ9C086 356 aaPredicted RBP23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 SPG21Q9NZD8 308 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 EVPLQ92817 2033 aa23.75■■□□□ 1.39
SQSTM1-210ENST00000506042 MYO7AQ13402 2215 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 TMEM221A6NGB7 291 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 M0R296 226 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 EOMESO95936 686 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 OATP04181 439 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 CDC27P30260 824 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 CIITAP33076 1130 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 ADD1P35611 737 aaKnown RBP23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 USP11P51784 963 aa23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 CBX2Q14781 532 aaPredicted RBP23.74■■□□□ 1.39
SQSTM1-210ENST00000506042 TMC7Q7Z402 723 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 577.5 ms