RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 IFT81Q8WYA0 676 aa17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 IDI2Q9BXS1 227 aa17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TYW1Q9NV66 732 aaKnown RBP17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 BZW2Q9Y6E2 419 aaKnown RBP17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 EML1O00423 815 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 RAD51CO43502 376 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 NR3C1P04150 777 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 JAM2P57087 298 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SKOR1P84550 965 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ICA1Q05084 483 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 KCNA1Q09470 495 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ICE2Q659A1 982 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 DLK2Q6UY11 383 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GBP6Q6ZN66 633 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SLC35C1Q96A29 364 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CCDC43Q96MW1 224 aaKnown RBP17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SPAG5Q96R06 1193 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GOLPH3Q9H4A6 298 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CLSTN1O94985 981 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 KIF4AO95239 1232 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 NDUFB10O96000 172 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 FOSP01100 380 aaPredicted RBP17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 XRCC5P13010 732 aaKnown RBP17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CORO7P57737 925 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 JAG1P78504 1218 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CYP4A11Q02928 519 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 RPS6KA1Q15418 735 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 NBPF9Q3BBW0 867 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 MICALL2Q8IY33 904 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GMCL1P1Q8NEA9 526 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GMCL1Q96IK5 515 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 PRMT6Q96LA8 375 aaPredicted RBP17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 POLR3CQ9BUI4 534 aaPredicted RBP17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 BHMT2Q9H2M3 363 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 FBXL5Q9UKA1 691 aa17.57■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 LOC102724159A0A0B4J2E5 919 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ZNF233A6NK53 670 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 MYCNP04198 464 aaPredicted RBP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 PWP2Q15269 919 aaKnown RBP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 DCAF17Q5H9S7 520 aaPredicted RBP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SYDE2Q5VT97 1194 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ALKBH5Q6P6C2 394 aaKnown RBP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SCFD2Q8WU76 684 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 BORCS6Q96GS4 357 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 MRIQ9BWK5 157 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TDRD3Q9H7E2 651 aaKnown RBP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SPDYE3A6NKU9 549 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ANKRD65E5RJM6 399 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 KCNK3O14649 394 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CLIC2O15247 247 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 EIF3HO15372 352 aaKnown RBP eCLIP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SLC16A3O15427 465 aaKnown RBP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TGFB1I1O43294 461 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GDF11O95390 407 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 EYA4O95677 639 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 KRT14P02533 472 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 HOXA13P31271 388 aaPredicted RBP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GJB7Q6PEY0 223 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TMEM179Q6ZVK1 233 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 EIF2AK1Q9BQI3 630 aaKnown RBP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 METTL14Q9HCE5 456 aaKnown RBP17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 RGL1Q9NZL6 768 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 STK24Q9Y6E0 443 aa17.56■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 POLR2AP24928 1970 aaKnown RBP17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GRIN3BO60391 1043 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GUCY2FP51841 1108 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GNGT1P63211 74 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CFAP58Q5T655 872 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SAMD1Q6SPF0 538 aaPredicted RBP17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 KLHL7Q8IXQ5 586 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TPCN2Q8NHX9 752 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 OLIG1Q8TAK6 271 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TAF4BQ92750 862 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 RUFY1Q96T51 708 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GMLQ99445 158 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 IKZF4Q9H2S9 585 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CNOT7Q9UIV1 285 aaKnown RBP17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 KCNG1Q9UIX4 513 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 BHMG1C9JSJ3 638 aaPredicted RBP17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 GCNT3O95395 438 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CYP3A4P08684 503 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TNNC1P63316 161 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 DNAJC21Q5F1R6 531 aaKnown RBP17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 RINT1Q6NUQ1 792 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CD302Q8IX05 232 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SH2D3CQ8N5H7 860 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ACTRT1Q8TDG2 376 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 PBKQ96KB5 322 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ATP8B3O60423 1300 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ZMYM2Q9UBW7 1377 aa17.55■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 IGLV3-22A0A075B6J6 115 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 SFI1A8K8P3 1242 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 DDX3XO00571 662 aaKnown RBP eCLIP17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 RPL13P26373 211 aaKnown RBP17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ANXA13P27216 316 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ECHS1P30084 290 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ERVK-9P63128 1117 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 ABCB5Q2M3G0 1257 aa17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 TTC19Q6DKK2 380 aaPredicted RBP17.54■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 BTNL9Q6UXG8 535 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms