RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 SRCIN1Q9C0H9 1055 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 TNMDQ9H2S6 317 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 IP6K2Q9UHH9 426 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 SMG5Q9UPR3 1016 aaKnown RBP5.59□□□□□ -1.51
USP54-216ENST00000498143 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.59□□□□□ -1.51
USP54-216ENST00000498143 SALL1Q9NSC2 1324 aa5.59□□□□□ -1.51
USP54-216ENST00000498143 TRIM64CA6NLI5 447 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 AXIN1O15169 862 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 RB1P06400 928 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 ADRB1P08588 477 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 KRT4P19013 534 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 CETN2P41208 172 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 FLOT2Q14254 428 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 CCDC178Q5BJE1 867 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 DUSP27Q5VZP5 1158 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 PSAPL1Q6NUJ1 521 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 GLIS3Q8NEA6 775 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.59□□□□□ -1.52
USP54-216ENST00000498143 TGFBRAP1Q8WUH2 860 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 GLMNQ92990 594 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 BRD9Q9H8M2 597 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 MCM9Q9NXL9 1143 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 KIAA1522Q9P206 1035 aaPredicted RBP5.59□□□□□ -1.52
USP54-216ENST00000498143 EMSYQ7Z589 1322 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 SYNRGQ9UMZ2 1314 aa5.59□□□□□ -1.52
USP54-216ENST00000498143 ABCC12Q96J65 1359 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 SPDYE16A6NNV3 312 aaPredicted RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 TULP2O00295 520 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 COBLO75128 1261 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 ADCY5O95622 1261 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 HOXB8P17481 243 aaPredicted RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 CYP7A1P22680 504 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 RRM1P23921 792 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 ACVR2BQ13705 512 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 DIXDC1Q155Q3 683 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 C8orf34Q49A92 452 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 GRAMD4Q6IC98 578 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 TMEM57Q8N5G2 664 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 SPATA5Q8NB90 893 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 EHBP1Q8NDI1 1231 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 TCP11Q8WWU5 503 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 TBC1D32Q96NH3 1257 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 LZTS2Q9BRK4 669 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 SLC39A3Q9BRY0 314 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 GREM2Q9H772 168 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 CACNA1EQ15878 2313 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 KHNYNO15037 678 aaKnown RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 OATP04181 439 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 FAM200BP0CF97 657 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 MAPK8P45983 427 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 CLCN5P51795 746 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 TDGQ13569 410 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 CBX2Q14781 532 aaPredicted RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 CCDC184Q52MB2 194 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 FKBP1CQ5VVH2 108 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 CNKSR3Q6P9H4 555 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 FERMT3Q86UX7 667 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 SPATS2Q86XZ4 545 aaKnown RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 FAM9CQ8IZT9 166 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 ARHGEF2Q92974 986 aaKnown RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 OSBPL9Q96SU4 736 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 NACAP1Q9BZK3 213 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 SPATC1LQ9H0A9 340 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 FAM49AQ9H0Q0 323 aaPredicted RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 TRPV6Q9H1D0 765 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 VCXQ9H320 206 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 ATP6V0A4Q9HBG4 840 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 COL4A3BPQ9Y5P4 624 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 IL16Q14005 1332 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 MED23Q9ULK4 1368 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 EBAG9O00559 213 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 MYCLP12524 364 aaPredicted RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 TMPOP42166 694 aaKnown RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 PIK3CAP42336 1068 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 CETN1Q12798 172 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 CEP78Q5JTW2 689 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 LGMNQ99538 433 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 MFRPQ9BY79 579 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 DRC3Q9H069 523 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 CNGB3Q9NQW8 809 aa5.58□□□□□ -1.52
USP54-216ENST00000498143 HOOK1Q9UJC3 728 aaKnown RBP5.58□□□□□ -1.52
USP54-216ENST00000498143 TARSL2A2RTX5 802 aaKnown RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 STMND1H3BQB6 276 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 BACH1O14867 736 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 REC8O95072 547 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 LDHAP00338 332 aaKnown RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 MYBP10242 640 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 ADGRE1Q14246 886 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 TERF2Q15554 542 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 PPP4R3AQ6IN85 833 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 FBXO11Q86XK2 927 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 SAMD14Q8IZD0 417 aaPredicted RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 CEP112Q8N8E3 955 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 ZNF483Q8TF39 744 aaPredicted RBP5.57□□□□□ -1.52
USP54-216ENST00000498143 OSBP2Q969R2 916 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 SPDL1Q96EA4 605 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 MS4A4AQ96JQ5 239 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 TEX13BQ9BXU2 312 aa5.57□□□□□ -1.52
USP54-216ENST00000498143 LNPKQ9C0E8 428 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms