RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	CDK17	Q00537	523 aa		11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	ROR2	Q01974	943 aa	Known RBP	11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	TMED2	Q15363	201 aa		11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	LRRC36	Q1X8D7	754 aa		11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	TBC1D25	Q3MII6	688 aa		11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	CFAP157	Q5JU67	520 aa		11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	ZNF571	Q7Z3V5	609 aa	Predicted RBP	11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	CCNJL	Q8IV13	435 aa		11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	TAB3	Q8N5C8	712 aa	Predicted RBP	11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	PNMA1	Q8ND90	353 aa		11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	SNRNP27	Q8WVK2	155 aa	Known RBP	11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	ZNF317	Q96PQ6	595 aa	Predicted RBP	11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	PABPC3	Q9H361	631 aa	Known RBP	11.47	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	SMCO2	A6NFE2	343 aa		11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	ASAP2	O43150	1006 aa		11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	TOM1	O60784	492 aa		11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	OPHN1	O60890	802 aa		11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	KCNH2	Q12809	1159 aa		11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	NONO	Q15233	471 aa	Known RBP eCLIP	11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	DIXDC1	Q155Q3	683 aa		11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	HHAT	Q5VTY9	493 aa		11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	JAML	Q86YT9	394 aa		11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	ALG13	Q9NP73	1137 aa	Known RBP	11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	TMEM260	Q9NX78	707 aa		11.46	□□□□□ -0.57
TRAPPC12-223	ENST00000497597	USP17L3	A6NCW0	530 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	USP17L4	A6NCW7	530 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	PJA2	O43164	708 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	NR2F2	P24468	414 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	CTSW	P56202	376 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	PLS1	Q14651	629 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	SEC23A	Q15436	765 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	ZRSR2	Q15696	482 aa	Known RBP	11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	PFKFB3	Q16875	520 aa	Predicted RBP	11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	KIAA1755	Q5JYT7	1200 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	USP17L1	Q7RTZ2	530 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	PHLDB2	Q86SQ0	1253 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	ADGRA1	Q86SQ6	560 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	NBPF5P	Q86XG9	351 aa	Predicted RBP	11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	KIAA0825	Q8IV33	1275 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	TBCK	Q8TEA7	893 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	PIGO	Q8TEQ8	1089 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	DYNLL2	Q96FJ2	89 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	FAM118B	Q9BPY3	351 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	LMCD1	Q9NZU5	365 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	DIP2A	Q14689	1571 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	NWD1	Q149M9	1564 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	AFF2	P51816	1311 aa		11.46	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	THAP12	O43422	761 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	SPOP	O43791	374 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	KRT15	P19012	456 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	MRPS35	P82673	323 aa	Known RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	NPY5R	Q15761	445 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	CALCRL	Q16602	461 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	EXOC3L4	Q17RC7	722 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	FIGN	Q5HY92	759 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	RBM26	Q5T8P6	1007 aa	Known RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	ZNF746	Q6NUN9	644 aa	Predicted RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	CEP128	Q6ZU80	1094 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	KRT28	Q7Z3Y7	464 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	MFN1	Q8IWA4	741 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	TPCN2	Q8NHX9	752 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	ERP44	Q9BS26	406 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	NT5C3A	Q9H0P0	336 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	SEC63	Q9UGP8	760 aa	Known RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	TCRBV5S4A2T	A0A5A2	114 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	NVL	O15381	856 aa	Known RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	CREB3	O43889	395 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	RTN3	O95197	1032 aa	Predicted RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	ALDH3A1	P30838	453 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	RASSF2	P50749	326 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	EIF6	P56537	245 aa	Known RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	ALX1	Q15699	326 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	KYNU	Q16719	465 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	LRRC37B	Q96QE4	947 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	ERVK-5	Q9HDB9	667 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	MYH7B	A7E2Y1	1941 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	PTDSS1	P48651	473 aa	Known RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	GALC	P54803	685 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	MTM1	Q13496	603 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	CNGA2	Q16280	664 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	ZNF572	Q7Z3I7	529 aa	Predicted RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	GBP7	Q8N8V2	638 aa	Predicted RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	ATXN2L	Q8WWM7	1075 aa	Known RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	SPOCK2	Q92563	424 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	PWWP2A	Q96N64	755 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	NAP1L3	Q99457	506 aa	Predicted RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	POP1	Q99575	1024 aa	Known RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	OCEL1	Q9H607	264 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	TXLNG	Q9NUQ3	528 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	SAP30BP	Q9UHR5	308 aa	Known RBP	11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	NAGPA	Q9UK23	515 aa		11.45	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	WTIP	A6NIX2	430 aa	Predicted RBP	11.44	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	TSPY3	P0CV98	308 aa		11.44	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	TSPY8	P0CW00	308 aa		11.44	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	TNFAIP3	P21580	790 aa		11.44	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	KCNQ4	P56696	695 aa		11.44	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	RIPK1	Q13546	671 aa		11.44	□□□□□ -0.58
TRAPPC12-223	ENST00000497597	RCN1	Q15293	331 aa		11.44	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms