RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 BANK1Q8NDB2 785 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 AFPP02771 609 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 TUBBP07437 444 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 XRCC5P13010 732 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 UCHL3P15374 230 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 PON1P27169 355 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 EXOC3L4Q17RC7 722 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 CHADLQ6NUI6 762 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 TADA2BQ86TJ2 420 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 LARGE2Q8N3Y3 721 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 GRIN2DO15399 1336 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 PJA2O43164 708 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 ERLIN2O94905 339 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 FAM13AO94988 1023 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 SLC18A3Q16572 532 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 RDH13Q8NBN7 331 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 CASKIN2Q8WXE0 1202 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 AGBL1Q96MI9 1066 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 TRAF3IP3Q9Y228 551 aa18.05■□□□□ 0.48
CCDC88B-210ENST00000494566 ZNF233A6NK53 670 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 GCOM1H8Y6P7 765 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 TGFB1I1O43294 461 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 GAS7O60861 476 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 EYA4O95677 639 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 POLR2MP0CAP2 368 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 PPFIA1Q13136 1202 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 CEP85LQ5SZL2 805 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 HSD17B14Q9BPX1 270 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 TMX2Q9Y320 296 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 H0YHG0 523 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 RAD51CO43502 376 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 CEP104O60308 925 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 DPY19L2P1Q6NXN4 242 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 RSBN1LQ6PCB5 846 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 ZC3H3Q8IXZ2 948 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 PPM1EQ8WY54 764 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 CAPN7Q9Y6W3 813 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 CNTNAP1P78357 1384 aa18.04■□□□□ 0.48
CCDC88B-210ENST00000494566 EIF3HO15372 352 aaKnown RBP eCLIP18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 CALUO43852 315 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 CYP2J2P51589 502 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 MMGT1Q8N4V1 131 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 RPGRIP1Q96KN7 1286 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 EDEM3Q9BZQ6 932 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 UNC45AQ9H3U1 944 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 HOMER2Q9NSB8 354 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 GCNT4Q9P109 453 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 NPM3O75607 178 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 PSMD10O75832 226 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 TCP1P17987 556 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 EPHB4P54760 987 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 CFAP221Q4G0U5 840 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 PPP4R3CPQ6ZMV5 832 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 IRF2BP2Q7Z5L9 587 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 ZNF577Q9BSK1 485 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 DDX47Q9H0S4 455 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 LRRC4CQ9HCJ2 640 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 TYW1Q9NV66 732 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 ZMYM2Q9UBW7 1377 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 COL4A5P29400 1685 aa18.03■□□□□ 0.48
CCDC88B-210ENST00000494566 SMIM23A6NLE4 172 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 SLC20A2Q08357 652 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 FOXR2Q6PJQ5 311 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 SLC35C1Q96A29 364 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 POLR3CQ9BUI4 534 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 GOPCQ9HD26 462 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 TISP43B9A030 160 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 RBAK-RBAKDNI3L0D1 243 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 PDXKO00764 312 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 RPS6KA5O75582 802 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 TRIM49P0CI25 452 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 TRIM49CP0CI26 452 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 TMOD1P28289 359 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 FRMD5Q7Z6J6 570 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 CPXCR1Q8N123 301 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 DPH5Q9H2P9 285 aa18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 CHORDC1Q9UHD1 332 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 HERC5Q9UII4 1024 aaKnown RBP18.02■□□□□ 0.48
CCDC88B-210ENST00000494566 CYP3A4P08684 503 aa18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 EPB41P11171 864 aaKnown RBP18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 PRPF4BQ13523 1007 aaKnown RBP18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 EPHA7Q15375 998 aa18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 NAB2Q15742 525 aa18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 NBPF9Q3BBW0 867 aa18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 C1orf186Q6ZWK4 172 aa18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 LDHDQ86WU2 507 aa18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 OGFOD1Q8N543 542 aa18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 IL31RAQ8NI17 732 aa18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 UHMK1Q8TAS1 419 aaKnown RBP18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 AIPL1Q9NZN9 384 aa18.02■□□□□ 0.47
CCDC88B-210ENST00000494566 TMEM150BA6NC51 233 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 PIK3CDO00329 1044 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 FLT3P36888 993 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 CEP55Q53EZ4 464 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 FAM151AQ8WW52 585 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 CELF4Q9BZC1 486 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 GRID2IPA4D2P6 1211 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 GFPT2O94808 682 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 ITGA4P13612 1032 aa18.01■□□□□ 0.47
CCDC88B-210ENST00000494566 INPP5BP32019 993 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms