RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 ELOA2Q8IYF1 753 aaPredicted RBP21.51■■□□□ 1.03
USP39-218ENST00000493829 ARRDC4Q8NCT1 418 aa21.51■■□□□ 1.03
USP39-218ENST00000493829 SLC7A3Q8WY07 619 aa21.51■■□□□ 1.03
USP39-218ENST00000493829 DNAJC19Q96DA6 116 aa21.51■■□□□ 1.03
USP39-218ENST00000493829 CEP89Q96ST8 783 aa21.51■■□□□ 1.03
USP39-218ENST00000493829 KIAA1468Q9P260 1216 aa21.51■■□□□ 1.03
USP39-218ENST00000493829 SFI1A8K8P3 1242 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 NBPF20Q3BBV1 942 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 LRRC71Q8N4P6 559 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 C7orf31Q8N865 590 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 U2AF1L4Q8WU68 220 aaKnown RBP21.5■■□□□ 1.03
USP39-218ENST00000493829 LMBR1Q8WVP7 490 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 HPS3Q969F9 1004 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 XPNPEP1Q9NQW7 623 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 DGAT1O75907 488 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 RFC5P40937 340 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 KMT5BQ4FZB7 885 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 ZNF484Q5JVG2 852 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 RBM43Q6ZSC3 357 aaKnown RBP21.5■■□□□ 1.03
USP39-218ENST00000493829 TMEM143Q96AN5 459 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 SUGCTQ9HAC7 445 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 EXOC1Q9NV70 894 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 PANK4Q9NVE7 773 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 HDAC6Q9UBN7 1215 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 MAN1B1Q9UKM7 699 aa21.5■■□□□ 1.03
USP39-218ENST00000493829 SCN10AQ9Y5Y9 1956 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 A0A1W2PQ45 241 aaPredicted RBP21.49■■□□□ 1.03
USP39-218ENST00000493829 A0A1W2PQY0 241 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 KLRC4O43908 158 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 FAM13AO94988 1023 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 C22orf31O95567 290 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 TFRCP02786 760 aaKnown RBP21.49■■□□□ 1.03
USP39-218ENST00000493829 MYL1P05976 194 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 GUCY2CP25092 1073 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 COASYQ13057 564 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 HIC1Q14526 733 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 METTL13Q8N6R0 699 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 KCND2Q9NZV8 630 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 TBC1D7Q9P0N9 293 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 OGDHLQ9ULD0 1010 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 COL1A2P08123 1366 aa21.49■■□□□ 1.03
USP39-218ENST00000493829 MOXD2PA6NHM9 499 aa21.48■■□□□ 1.03
USP39-218ENST00000493829 DNM1LO00429 736 aa21.48■■□□□ 1.03
USP39-218ENST00000493829 ZNF200P98182 395 aaPredicted RBP21.48■■□□□ 1.03
USP39-218ENST00000493829 MAPK7Q13164 816 aa21.48■■□□□ 1.03
USP39-218ENST00000493829 DRP2Q13474 957 aa21.48■■□□□ 1.03
USP39-218ENST00000493829 UNC13DQ70J99 1090 aa21.48■■□□□ 1.03
USP39-218ENST00000493829 DAW1Q8N136 415 aa21.48■■□□□ 1.03
USP39-218ENST00000493829 POLR3FQ9H1D9 316 aaPredicted RBP21.48■■□□□ 1.03
USP39-218ENST00000493829 DHX33Q9H6R0 707 aaKnown RBP21.48■■□□□ 1.03
USP39-218ENST00000493829 MAFO75444 373 aaPredicted RBP21.47■■□□□ 1.03
USP39-218ENST00000493829 KLRC1P26715 233 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 CLCN3P51790 818 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 MARCH8Q5T0T0 291 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 SFR1Q86XK3 245 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 CCDC65Q8IXS2 484 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 MCPH1Q8NEM0 835 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 GLT1D1Q96MS3 346 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 TSEN34Q9BSV6 310 aaKnown RBP21.47■■□□□ 1.03
USP39-218ENST00000493829 TUBE1Q9UJT0 475 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 NRCAMQ92823 1304 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 C17orf102A2RUQ5 167 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 SGPL1O95470 568 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 GJB1P08034 283 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 CNNM4Q6P4Q7 775 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 MTHFD1LQ6UB35 978 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 SASS6Q6UVJ0 657 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 STARD7Q9NQZ5 370 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 ODF2LQ9ULJ1 636 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 PHF24Q9UPV7 400 aa21.47■■□□□ 1.03
USP39-218ENST00000493829 GRIN2DO15399 1336 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 MYH11P35749 1972 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 CABYRO75952 493 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 LETM1O95202 739 aaPredicted RBP21.46■■□□□ 1.03
USP39-218ENST00000493829 SARSP49591 514 aaKnown RBP21.46■■□□□ 1.03
USP39-218ENST00000493829 HERC4Q5GLZ8 1057 aaPredicted RBP21.46■■□□□ 1.03
USP39-218ENST00000493829 EFCAB12Q6NXP0 572 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 NFRKBQ6P4R8 1299 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 SMYD4Q8IYR2 804 aaPredicted RBP21.46■■□□□ 1.03
USP39-218ENST00000493829 MYCT1Q8N699 235 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 SPATA20Q8TB22 786 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 CCDC47Q96A33 483 aaKnown RBP21.46■■□□□ 1.03
USP39-218ENST00000493829 DRC1Q96MC2 740 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 GSDMAQ96QA5 445 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 PPP1R16BQ96T49 567 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 PDLIM7Q9NR12 457 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 RMND1Q9NWS8 449 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 PPME1Q9Y570 386 aa21.46■■□□□ 1.03
USP39-218ENST00000493829 RRN3P2A6NIE6 340 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 ITGA7Q13683 1181 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 NT5DC1Q5TFE4 455 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 BSNDQ8WZ55 320 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 FGFBP2Q9BYJ0 223 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 CRISPLD2Q9H0B8 497 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 FAM49AQ9H0Q0 323 aaPredicted RBP21.45■■□□□ 1.02
USP39-218ENST00000493829 PARVGQ9HBI0 331 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 GDAQ9Y2T3 454 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 COL4A3BPQ9Y5P4 624 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 KAT6AQ92794 2004 aa21.45■■□□□ 1.02
USP39-218ENST00000493829 PVALEFA0A1B0GWK0 134 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms