RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 ATP1A3P13637 1013 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 ZNF18P17022 549 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 FLT3LGP49771 235 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 PMS1P54277 932 aaKnown RBP11.06□□□□□ -0.64
USP11-211ENST00000489111 HTRA3P83110 453 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 FANCCQ00597 558 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 ALCAMQ13740 583 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 ARHGEF6Q15052 776 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 DGKDQ16760 1214 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 BRDTQ58F21 947 aaPredicted RBP11.06□□□□□ -0.64
USP11-211ENST00000489111 PRAMEF19Q5SWL8 479 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 TMEM63BQ5T3F8 832 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 CDKAL1Q5VV42 579 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 CENPPQ6IPU0 288 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 TTI2Q6NXR4 508 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 PPP4R3CPQ6ZMV5 832 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 TLK2Q86UE8 772 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 DRC7Q8IY82 874 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 EXOC8Q8IYI6 725 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 DAW1Q8N136 415 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 GLIS3Q8NEA6 775 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 SCFD1Q8WVM8 642 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 IFT74Q96LB3 600 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 MED15Q96RN5 788 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 PPP1R9BQ96SB3 815 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 NIFKQ9BYG3 293 aaKnown RBP11.06□□□□□ -0.64
USP11-211ENST00000489111 FGFBP2Q9BYJ0 223 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 AP5M1Q9H0R1 490 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 THAP9Q9H5L6 903 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 POLD4Q9HCU8 107 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 SAMSN1Q9NSI8 373 aaKnown RBP11.06□□□□□ -0.64
USP11-211ENST00000489111 ERAP1Q9NZ08 941 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 IFNKQ9P0W0 207 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 FAM184BQ9ULE4 1060 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 PCDHB13Q9Y5F0 798 aa11.06□□□□□ -0.64
USP11-211ENST00000489111 AP5Z1O43299 807 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 TPM2P07951 284 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 MMP3P08254 477 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 ZNF286BP0CG31 522 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 ZNF865P0CJ78 1059 aaPredicted RBP11.05□□□□□ -0.64
USP11-211ENST00000489111 MAPTP10636 758 aaKnown RBP11.05□□□□□ -0.64
USP11-211ENST00000489111 AKR1A1P14550 325 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 ATP4AP20648 1035 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 PTGS1P23219 599 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 NMT1P30419 496 aaKnown RBP11.05□□□□□ -0.64
USP11-211ENST00000489111 CASP5P51878 434 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 SMTNP53814 917 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 TBC1D8BQ0IIM8 1120 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 PLCB4Q15147 1175 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 KNOP1Q1ED39 458 aaKnown RBP11.05□□□□□ -0.64
USP11-211ENST00000489111 BMT2Q1RMZ1 405 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 ANKRD40Q6AI12 368 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 FOXR2Q6PJQ5 311 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 EPM2AIP1Q7L775 607 aaPredicted RBP11.05□□□□□ -0.64
USP11-211ENST00000489111 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.05□□□□□ -0.64
USP11-211ENST00000489111 CD99L2Q8TCZ2 262 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 MRFAP1L1Q96HT8 127 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 PDLIM2Q96JY6 352 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 CTAGE1Q96RT6 745 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 JPH2Q9BR39 696 aaPredicted RBP11.05□□□□□ -0.64
USP11-211ENST00000489111 POLR3FQ9H1D9 316 aaPredicted RBP11.05□□□□□ -0.64
USP11-211ENST00000489111 HSD3B7Q9H2F3 369 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 SEMA6BQ9H3T3 888 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 C17orf75Q9HAS0 396 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 GPRC5CQ9NQ84 441 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 SAGE1Q9NXZ1 904 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 GABRQQ9UN88 632 aa11.05□□□□□ -0.64
USP11-211ENST00000489111 CCDC169A6NNP5 214 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 GOLGA6L6A8MZA4 724 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 KCNJ18B7U540 433 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 H0YCG3 227 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 GPR25O00155 361 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 DYNC1LI2O43237 492 aaPredicted RBP11.04□□□□□ -0.64
USP11-211ENST00000489111 CALUO43852 315 aaPredicted RBP11.04□□□□□ -0.64
USP11-211ENST00000489111 GAS2O43903 313 aaKnown RBP11.04□□□□□ -0.64
USP11-211ENST00000489111 HBP1O60381 514 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 PPFIA4O75335 1185 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 PRPF6O94906 941 aaKnown RBP11.04□□□□□ -0.64
USP11-211ENST00000489111 HOXD8P13378 290 aaPredicted RBP11.04□□□□□ -0.64
USP11-211ENST00000489111 EEF1GP26641 437 aaKnown RBP11.04□□□□□ -0.64
USP11-211ENST00000489111 CDC25BP30305 580 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 CPT1AP50416 773 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 PEX3P56589 373 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 UBASH3AP57075 661 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 RTP1P59025 263 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 KCNJ12Q14500 433 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 PPP2R5AQ15172 486 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 FILIP1LQ4L180 1135 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 HS2ST1Q7LGA3 356 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 ZNF720Q7Z2F6 126 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 CREBRFQ8IUR6 639 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 SYCP3Q8IZU3 236 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 GOLGA5Q8TBA6 731 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 TRIB2Q92519 343 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 TRIM44Q96DX7 344 aaPredicted RBP11.04□□□□□ -0.64
USP11-211ENST00000489111 ERO1AQ96HE7 468 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 DUSP9Q99956 384 aaKnown RBP11.04□□□□□ -0.64
USP11-211ENST00000489111 BEGAINQ9BUH8 593 aa11.04□□□□□ -0.64
USP11-211ENST00000489111 SRRTQ9BXP5 876 aaKnown RBP11.04□□□□□ -0.64
USP11-211ENST00000489111 XPO4Q9C0E2 1151 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms