RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 TRPV2Q9Y5S1 764 aa20.85■□□□□ 0.93
PTCD3-217ENST00000488801 STK24Q9Y6E0 443 aa20.85■□□□□ 0.93
PTCD3-217ENST00000488801 COL4A6Q14031 1691 aa20.85■□□□□ 0.93
PTCD3-217ENST00000488801 RALGAPA2Q2PPJ7 1873 aa20.85■□□□□ 0.93
PTCD3-217ENST00000488801 SZT2Q5T011 3432 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 GPR32O75388 356 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 BRD1O95696 1058 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 DDIT3P35638 169 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 RARRES1P49788 294 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 DRP2Q13474 957 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 EFCAB12Q6NXP0 572 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 CNKSR3Q6P9H4 555 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 LRRC71Q8N4P6 559 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 XPNPEP1Q9NQW7 623 aa20.84■□□□□ 0.93
PTCD3-217ENST00000488801 CXXC1Q9P0U4 656 aaPredicted RBP20.84■□□□□ 0.93
PTCD3-217ENST00000488801 VWA3AA6NCI4 1184 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 BAIAP3O94812 1187 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 FGBP02675 491 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 RFC5P40937 340 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 GRIN1Q05586 938 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 LPIN1Q14693 890 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 IER5Q5VY09 327 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 OTUD6AQ7L8S5 288 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 SNX29Q8TEQ0 813 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 CEP170P1Q96L14 293 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 RNPC3Q96LT9 517 aaKnown RBP20.83■□□□□ 0.93
PTCD3-217ENST00000488801 AK8Q96MA6 479 aa20.83■□□□□ 0.93
PTCD3-217ENST00000488801 CELF4Q9BZC1 486 aaKnown RBP20.83■□□□□ 0.93
PTCD3-217ENST00000488801 FBXO2Q9UK22 296 aaPredicted RBP20.83■□□□□ 0.93
PTCD3-217ENST00000488801 GAS2O43903 313 aaKnown RBP20.82■□□□□ 0.92
PTCD3-217ENST00000488801 CCT6AP40227 531 aaKnown RBP20.82■□□□□ 0.92
PTCD3-217ENST00000488801 TMEM62Q0P6H9 643 aa20.82■□□□□ 0.92
PTCD3-217ENST00000488801 EMC2Q15006 297 aa20.82■□□□□ 0.92
PTCD3-217ENST00000488801 XKR9Q5GH70 373 aa20.82■□□□□ 0.92
PTCD3-217ENST00000488801 TSHZ1Q6ZSZ6 1077 aa20.82■□□□□ 0.92
PTCD3-217ENST00000488801 ZNF710Q8N1W2 664 aa20.82■□□□□ 0.92
PTCD3-217ENST00000488801 METTL13Q8N6R0 699 aa20.82■□□□□ 0.92
PTCD3-217ENST00000488801 PIGOQ8TEQ8 1089 aa20.82■□□□□ 0.92
PTCD3-217ENST00000488801 TMEM40Q8WWA1 233 aa20.82■□□□□ 0.92
PTCD3-217ENST00000488801 JPH2Q9BR39 696 aaPredicted RBP20.82■□□□□ 0.92
PTCD3-217ENST00000488801 ADAMTS10Q9H324 1103 aa20.82■□□□□ 0.92
PTCD3-217ENST00000488801 SLC26A4O43511 780 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 VTNP04004 478 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 TMOD1P28289 359 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 CDC25AP30304 524 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 GPC3P51654 580 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 SLC39A14Q15043 492 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 OTOP2Q7RTS6 562 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 EXOC8Q8IYI6 725 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 DBF4BQ8NFT6 615 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 NACC1Q96RE7 527 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 MAP7D2Q96T17 732 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 AGO3Q9H9G7 860 aaKnown RBP20.81■□□□□ 0.92
PTCD3-217ENST00000488801 CDHR5Q9HBB8 845 aa20.81■□□□□ 0.92
PTCD3-217ENST00000488801 CHD9Q3L8U1 2897 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 SOX1O00570 391 aaPredicted RBP20.8■□□□□ 0.92
PTCD3-217ENST00000488801 DGAT1O75907 488 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 GHRP10912 638 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 ACTN1P12814 892 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 LONP1P36776 959 aaKnown RBP20.8■□□□□ 0.92
PTCD3-217ENST00000488801 POLGP54098 1239 aaPredicted RBP20.8■□□□□ 0.92
PTCD3-217ENST00000488801 TMEM119Q4V9L6 283 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 KRT79Q5XKE5 535 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 KCTD17Q8N5Z5 321 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 USP38Q8NB14 1042 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 LINC00301Q8NCQ3 95 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 SLC7A3Q8WY07 619 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 APBB2Q92870 758 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 PNMA5Q96PV4 448 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 IFIH1Q9BYX4 1025 aaKnown RBP20.8■□□□□ 0.92
PTCD3-217ENST00000488801 SUGCTQ9HAC7 445 aa20.8■□□□□ 0.92
PTCD3-217ENST00000488801 SRPRBQ9Y5M8 271 aaKnown RBP20.8■□□□□ 0.92
PTCD3-217ENST00000488801 ATG2AQ2TAZ0 1938 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 ABHD14A-ACY1A0A1B0GW23 586 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 M0QZ92 97 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 YEATS4O95619 227 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 CRYBB1P53674 252 aaPredicted RBP20.79■□□□□ 0.92
PTCD3-217ENST00000488801 WDR5P61964 334 aaKnown RBP20.79■□□□□ 0.92
PTCD3-217ENST00000488801 GRB10Q13322 594 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 KIZQ2M2Z5 673 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 KCNK18Q7Z418 384 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 SEPT8Q92599 483 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 MTRQ99707 1265 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 MTIF3Q9H2K0 278 aaKnown RBP20.79■□□□□ 0.92
PTCD3-217ENST00000488801 DDX19AQ9NUU7 478 aaKnown RBP20.79■□□□□ 0.92
PTCD3-217ENST00000488801 KIAA1024Q9UPX6 916 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 AKT3Q9Y243 479 aa20.79■□□□□ 0.92
PTCD3-217ENST00000488801 TRIP11Q15643 1979 aa20.78■□□□□ 0.92
PTCD3-217ENST00000488801 A0A087WWV3 80 aa20.78■□□□□ 0.92
PTCD3-217ENST00000488801 EFCAB14O75071 495 aa20.78■□□□□ 0.92
PTCD3-217ENST00000488801 FXR1P51114 621 aaKnown RBP eCLIP20.78■□□□□ 0.92
PTCD3-217ENST00000488801 NLRP11P59045 1033 aaKnown RBP20.78■□□□□ 0.92
PTCD3-217ENST00000488801 FOXD4L5Q5VV16 416 aaPredicted RBP20.78■□□□□ 0.92
PTCD3-217ENST00000488801 ATL3Q6DD88 541 aa20.78■□□□□ 0.92
PTCD3-217ENST00000488801 FAM109BQ6ICB4 259 aaPredicted RBP20.78■□□□□ 0.92
PTCD3-217ENST00000488801 FAM43BQ6ZT52 329 aaPredicted RBP20.78■□□□□ 0.92
PTCD3-217ENST00000488801 ZNF410Q86VK4 478 aa20.78■□□□□ 0.92
PTCD3-217ENST00000488801 LRRC15Q8TF66 581 aa20.78■□□□□ 0.92
PTCD3-217ENST00000488801 FOXD4L4Q8WXT5 416 aaPredicted RBP20.78■□□□□ 0.92
PTCD3-217ENST00000488801 ZNF396Q96N95 335 aaPredicted RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms