RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 DENND2CQ68D51 928 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 NT5DC3Q86UY8 548 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 ZC3H3Q8IXZ2 948 aaKnown RBP14.44□□□□□ -0.1
USP40-214ENST00000483519 TCP11Q8WWU5 503 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 NAP1L3Q99457 506 aaPredicted RBP14.44□□□□□ -0.1
USP40-214ENST00000483519 NUDT12Q9BQG2 462 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 NT5C3AQ9H0P0 336 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 HDAC9Q9UKV0 1011 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 DIS3Q9Y2L1 958 aaKnown RBP14.44□□□□□ -0.1
USP40-214ENST00000483519 KDM3AQ9Y4C1 1321 aa14.44□□□□□ -0.1
USP40-214ENST00000483519 GOLGA6L10A0A0M3HER8 536 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 PPP1R12AO14974 1030 aaPredicted RBP14.43□□□□□ -0.1
USP40-214ENST00000483519 MYCNP04198 464 aaPredicted RBP14.43□□□□□ -0.1
USP40-214ENST00000483519 SLC10A5Q5PT55 438 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 EP400NLQ6ZTU2 488 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 ATXN2LQ8WWM7 1075 aaKnown RBP14.43□□□□□ -0.1
USP40-214ENST00000483519 HES6Q96HZ4 224 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 PABPC3Q9H361 631 aaKnown RBP14.43□□□□□ -0.1
USP40-214ENST00000483519 GOPCQ9HD26 462 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 TBC1D7Q9P0N9 293 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 AMFRQ9UKV5 643 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 RTN2O75298 545 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 CLTAP09496 248 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 PTENP60484 403 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 POU5F1Q01860 360 aaKnown RBP14.43□□□□□ -0.1
USP40-214ENST00000483519 LRCH2Q5VUJ6 765 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 TRPM8Q7Z2W7 1104 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 PNMA8AQ86V59 439 aaPredicted RBP14.43□□□□□ -0.1
USP40-214ENST00000483519 NLGN1Q8N2Q7 840 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 ATP8B4Q8TF62 1192 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 TRIM31Q9BZY9 425 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 KCTD10Q9H3F6 313 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 CCDC134Q9H6E4 229 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 INTS9Q9NV88 658 aaKnown RBP14.43□□□□□ -0.1
USP40-214ENST00000483519 FGGP02679 453 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 ACTN1P12814 892 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 ADCY7P51828 1080 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 PMS2P54278 862 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 DR1Q01658 176 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 PPP2R5AQ15172 486 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 SF3B3Q15393 1217 aaKnown RBP14.43□□□□□ -0.1
USP40-214ENST00000483519 CLUL1Q15846 466 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 EXOC3L4Q17RC7 722 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 PIGSQ96S52 555 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 TRIM51Q9BSJ1 452 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 STMN4Q9H169 189 aaPredicted RBP14.43□□□□□ -0.1
USP40-214ENST00000483519 NENFQ9UMX5 172 aa14.43□□□□□ -0.1
USP40-214ENST00000483519 FRMD3A2A2Y4 597 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 RGS16O15492 202 aaPredicted RBP14.42□□□□□ -0.1
USP40-214ENST00000483519 AFPP02771 609 aaKnown RBP14.42□□□□□ -0.1
USP40-214ENST00000483519 MYO1EQ12965 1108 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 ACCSLQ4AC99 568 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 NSMCE1Q8WV22 266 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 STAMBPL1Q96FJ0 436 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 VAT1LQ9HCJ6 419 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 EMILIN3Q9NT22 766 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 C15orf41Q9Y2V0 281 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 FAM187AA6NFU0 413 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 MAFGO15525 162 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 AGTP01019 485 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 RASA1P20936 1047 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 NR2F2P24468 414 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 ADCY2Q08462 1091 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 HERC4Q5GLZ8 1057 aaPredicted RBP14.42□□□□□ -0.1
USP40-214ENST00000483519 USP17L2Q6R6M4 530 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 FRMD5Q7Z6J6 570 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 AMIGO3Q86WK7 504 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 LRRC34Q8IZ02 419 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 SCFD1Q8WVM8 642 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 ERP44Q9BS26 406 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 FGFBP2Q9BYJ0 223 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 MTFR1LQ9H019 292 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 LRRC4CQ9HCJ2 640 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 ARMCX3Q9UH62 379 aaPredicted RBP14.42□□□□□ -0.1
USP40-214ENST00000483519 RASAL2Q9UJF2 1139 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 DAAM1Q9Y4D1 1078 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 PCDHA2Q9Y5H9 948 aa14.42□□□□□ -0.1
USP40-214ENST00000483519 SHBGP04278 402 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 SLC9A1P19634 815 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 KLRK1P26718 216 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 DHX34Q14147 1143 aaKnown RBP14.41□□□□□ -0.1
USP40-214ENST00000483519 ZNF268Q14587 947 aaPredicted RBP14.41□□□□□ -0.1
USP40-214ENST00000483519 ZKSCAN8Q15776 578 aaPredicted RBP14.41□□□□□ -0.1
USP40-214ENST00000483519 C6orf118Q5T5N4 469 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 DUPD1Q68J44 220 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 TBC1D1Q86TI0 1168 aaPredicted RBP14.41□□□□□ -0.1
USP40-214ENST00000483519 SLC44A5Q8NCS7 719 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 NOP53Q9NZM5 478 aaKnown RBP14.41□□□□□ -0.1
USP40-214ENST00000483519 NAV1Q8NEY1 1877 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 SPDYE3A6NKU9 549 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 MARCH6O60337 910 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 VIMP08670 466 aaKnown RBP14.41□□□□□ -0.1
USP40-214ENST00000483519 IRX1P78414 480 aaPredicted RBP14.41□□□□□ -0.1
USP40-214ENST00000483519 ECM1Q16610 540 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 HYIQ5T013 277 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 ELAC2Q9BQ52 826 aaKnown RBP14.41□□□□□ -0.1
USP40-214ENST00000483519 ZDHHC18Q9NUE0 388 aa14.41□□□□□ -0.1
USP40-214ENST00000483519 TLDC2A0PJX2 215 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 KIF3CO14782 793 aa14.4□□□□□ -0.1
USP40-214ENST00000483519 GFPT2O94808 682 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms