RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 CCDC65Q8IXS2 484 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 ADSSL1Q8N142 457 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 SLAIN1Q8ND83 568 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 GLIS3Q8NEA6 775 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 FAM200AQ8TCP9 573 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 KAT2BQ92831 832 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 GLG1Q92896 1179 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 FAM167AQ96KS9 214 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 CEP170P1Q96L14 293 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 BEGAINQ9BUH8 593 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 TIPINQ9BVW5 301 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 RNPEPQ9H4A4 650 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 CBX8Q9HC52 389 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 POLD4Q9HCU8 107 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 GPRC5CQ9NQ84 441 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 OLFML3Q9NRN5 406 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 BMP2KQ9NSY1 1161 aaPredicted RBP9.15□□□□□ -0.94
USP4-210ENST00000483212 EXOC1Q9NV70 894 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 ERAP1Q9NZ08 941 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 PPME1Q9Y570 386 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 TRIM17Q9Y577 477 aa9.15□□□□□ -0.94
USP4-210ENST00000483212 IGKV6-21A0A0C4DH24 114 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 H3BRB1 525 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 HBP1O60381 514 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 MAFO75444 373 aaPredicted RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 DGAT1O75907 488 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 INHAP05111 366 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 KRT18P05783 430 aaKnown RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 HSPA8P11142 646 aaKnown RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 GAP43P17677 238 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 CST5P28325 142 aaPredicted RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 ERCC5P28715 1186 aaPredicted RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 GRK4P32298 578 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 RFC5P40937 340 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 PRCPP42785 496 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 ZNF165P49910 485 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 CPT1AP50416 773 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 CASP5P51878 434 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 BEX3Q00994 111 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 CT47A1Q5JQC4 288 aaPredicted RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 FAM26FQ5R3K3 315 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 CCSAPQ6IQ19 270 aaPredicted RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 TRMT1LQ7Z2T5 733 aaKnown RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 LINC01465Q8N7H1 131 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 KLHDC9Q8NEP7 349 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 BSNDQ8WZ55 320 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 STRA6Q9BX79 667 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 GTPBP4Q9BZE4 634 aaKnown RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 HSD3B7Q9H2F3 369 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 TUT1Q9H6E5 874 aaKnown RBP9.14□□□□□ -0.95
USP4-210ENST00000483212 SLC39A2Q9NP94 309 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 NRBP2Q9NSY0 501 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 PTPN22Q9Y2R2 807 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 COL4A3BPQ9Y5P4 624 aa9.14□□□□□ -0.95
USP4-210ENST00000483212 COL1A2P08123 1366 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 SFI1A8K8P3 1242 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 TBCAO75347 108 aaKnown RBP9.13□□□□□ -0.95
USP4-210ENST00000483212 PPP1R37O75864 691 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 FAM13AO94988 1023 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 C22orf31O95567 290 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 PGK1P00558 417 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 PLS3P13797 630 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 HOXC8P31273 242 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 HOXD13P35453 343 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 ARL2P36404 184 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 PMS1P54277 932 aaKnown RBP9.13□□□□□ -0.95
USP4-210ENST00000483212 SOX10P56693 466 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 RTP1P59025 263 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 PURAQ00577 322 aaKnown RBP9.13□□□□□ -0.95
USP4-210ENST00000483212 EMC2Q15006 297 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 FSCN1Q16658 493 aaKnown RBP9.13□□□□□ -0.95
USP4-210ENST00000483212 BMT2Q1RMZ1 405 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 ZCWPW2Q504Y3 356 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 HERC4Q5GLZ8 1057 aaPredicted RBP9.13□□□□□ -0.95
USP4-210ENST00000483212 ZNF484Q5JVG2 852 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 MARCH8Q5T0T0 291 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 LUZP1Q86V48 1076 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 GUF1Q8N442 669 aaKnown RBP9.13□□□□□ -0.95
USP4-210ENST00000483212 RNF214Q8ND24 703 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 MCPH1Q8NEM0 835 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 SCFD1Q8WVM8 642 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 KCNN1Q92952 543 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 CCDC47Q96A33 483 aaKnown RBP9.13□□□□□ -0.95
USP4-210ENST00000483212 AP5M1Q9H0R1 490 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 ATP6V0A4Q9HBG4 840 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 PARVGQ9HBI0 331 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 XPNPEP3Q9NQH7 507 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 SEL1LQ9UBV2 794 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 DDX20Q9UHI6 824 aaKnown RBP9.13□□□□□ -0.95
USP4-210ENST00000483212 DACH1Q9UI36 760 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 CENPFP49454 3210 aa9.13□□□□□ -0.95
USP4-210ENST00000483212 MYH9P35579 1960 aaKnown RBP9.13□□□□□ -0.95
USP4-210ENST00000483212 ZMYM2Q9UBW7 1377 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 ADGRA3Q8IWK6 1321 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 GOLGA6L3A6NEY3 463 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 IKBKBO14920 756 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 MYBP10242 640 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 MAPTP10636 758 aaKnown RBP9.12□□□□□ -0.95
USP4-210ENST00000483212 RARBP10826 455 aa9.12□□□□□ -0.95
USP4-210ENST00000483212 INSRRP14616 1297 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms