RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 ZNF710Q8N1W2 664 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 OXER1Q8TDS5 423 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 ZSCAN31Q96LW9 406 aaPredicted RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 FAM20AQ96MK3 541 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 LLPHQ9BRT6 129 aaKnown RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 OSBPL7Q9BZF2 842 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 GJB4Q9NTQ9 266 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 DOCK5Q9H7D0 1870 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 LCHNA4D1U4 455 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 ZBTB42B2RXF5 422 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 GTPBP6O43824 516 aaPredicted RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 CCNT1O60563 726 aaKnown RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 JAK2O60674 1132 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 C22orf31O95567 290 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 MMP1P03956 469 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 TMOD1P28289 359 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 PRKCEQ02156 737 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 TMEM62Q0P6H9 643 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 ADGRE1Q14246 886 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 ODR4Q5SWX8 454 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 L1TD1Q5T7N2 865 aaKnown RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 FOXD4L5Q5VV16 416 aaPredicted RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 FAM117BQ6P1L5 589 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 B3GNT9Q6UX72 402 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 KIAA0319LQ8IZA0 1049 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 FOXD4L4Q8WXT5 416 aaPredicted RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 ARNTL2Q8WYA1 636 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 YME1L1Q96TA2 773 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 UPF2Q9HAU5 1272 aaKnown RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 KCNMB3Q9NPA1 279 aa12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 RRAGDQ9NQL2 400 aaPredicted RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 SH2B1Q9NRF2 756 aaPredicted RBP12.93□□□□□ -0.34
HLA-DOB-208ENST00000475235 HMGB1P1B2RPK0 211 aaPredicted RBP12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 SLC37A4O43826 429 aa12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 MARCH6O60337 910 aa12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 DKC1O60832 514 aaKnown RBP eCLIP12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 POU3F3P20264 500 aaPredicted RBP12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 CD52P31358 61 aa12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 PAK2Q13177 524 aa12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 TRMT1LQ7Z2T5 733 aaKnown RBP12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 METTL13Q8N6R0 699 aa12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 SP7Q8TDD2 431 aaPredicted RBP12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 GJA10Q969M2 543 aa12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 TGS1Q96RS0 853 aaKnown RBP12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 AGO3Q9H9G7 860 aaKnown RBP12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 CERS4Q9HA82 394 aa12.92□□□□□ -0.34
HLA-DOB-208ENST00000475235 LINC01553A4QN01 128 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 ZNF862O60290 1169 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 DTNBO60941 627 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 ARHGEF15O94989 841 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 UPP2O95045 317 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 ERVK-21P61565 698 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 HMGN5P82970 282 aaKnown RBP12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 NR5A1Q13285 461 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 PPP2R5CQ13362 524 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 SAFBQ15424 915 aaKnown RBP eCLIP12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 XKR3Q5GH77 459 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 KRT40Q6A162 431 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 DIS3L2Q8IYB7 885 aaKnown RBP12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 SLFN12Q8IYM2 578 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 TNFRSF25Q93038 417 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 SAMD11Q96NU1 681 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 KIF2CQ99661 725 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 PADI3Q9ULW8 664 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 GINS2Q9Y248 185 aa12.91□□□□□ -0.34
HLA-DOB-208ENST00000475235 ENPP3O14638 875 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 RPS6KA5O75582 802 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 BAG4O95429 457 aaKnown RBP12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 CRYBB1P53674 252 aaPredicted RBP12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 PSMC5P62195 406 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 TBC1D8BQ0IIM8 1120 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 ST3GAL1Q11201 340 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 RABEP1Q15276 862 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 UGCGQ16739 394 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 CCDC83Q8IWF9 413 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 FAM210AQ96ND0 272 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 NIFKQ9BYG3 293 aaKnown RBP12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 TSPYL2Q9H2G4 693 aaPredicted RBP12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 VAV3Q9UKW4 847 aa12.9□□□□□ -0.34
HLA-DOB-208ENST00000475235 CHD9Q3L8U1 2897 aa12.9□□□□□ -0.35
HLA-DOB-208ENST00000475235 TRIP12Q14669 1992 aaPredicted RBP12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 BTBD18B2RXH4 712 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 GPR182O15218 404 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 ST18O60284 1047 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 CDC42EP1Q00587 391 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 EARS2Q5JPH6 523 aaKnown RBP12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 EFCAB12Q6NXP0 572 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 PPM1EQ8WY54 764 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 C8orf76Q96K31 380 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 LMCD1Q9NZU5 365 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 SEPT9Q9UHD8 586 aaPredicted RBP12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 AKT3Q9Y243 479 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 MTCH2Q9Y6C9 303 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 COL4A6Q14031 1691 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 TET1Q8NFU7 2136 aa12.89□□□□□ -0.35
HLA-DOB-208ENST00000475235 EPOPA6NHQ4 379 aa12.88□□□□□ -0.35
HLA-DOB-208ENST00000475235 RFXAPO00287 272 aa12.88□□□□□ -0.35
HLA-DOB-208ENST00000475235 P4HBP07237 508 aaKnown RBP12.88□□□□□ -0.35
HLA-DOB-208ENST00000475235 STAG3L1P0CL83 205 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms