RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NRBP2Q9NSY0 501 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SAMD9Q5K651 1589 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SAMD9LQ8IVG5 1584 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 LDHAP00338 332 aaKnown RBP14.19□□□□□ -0.14
COL6A3-209ENST00000472056 RUNX1T1Q06455 604 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SOWAHDA6NJG2 315 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SPDYE16A6NNV3 312 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-209ENST00000472056 CDH16O75309 829 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 CCDC15Q0P6D6 951 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SPDYE2Q495Y8 402 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 TADA1Q96BN2 335 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 DBNDD2Q9BQY9 259 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 LRRIQ1Q96JM4 1722 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 DLATP10515 647 aaKnown RBP14.19□□□□□ -0.14
COL6A3-209ENST00000472056 CDC27P30260 824 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 EIF4A3P38919 411 aaKnown RBP14.19□□□□□ -0.14
COL6A3-209ENST00000472056 NUP107P57740 925 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 TFDP2Q14188 446 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 NAALADL2Q58DX5 795 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 ZBTB41Q5SVQ8 909 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 IFNL3Q8IZI9 196 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 LSG1Q9H089 658 aaKnown RBP14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SLC38A10Q9HBR0 1119 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SMARCAL1Q9NZC9 954 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SEL1LQ9UBV2 794 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 CEP152O94986 1710 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 PARVBQ9HBI1 364 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SLC39A2Q9NP94 309 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 DDX28Q9NUL7 540 aaKnown RBP14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SLC8A2Q9UPR5 921 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 WDR64B1ANS9 1081 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 GOLGA8RI6L899 631 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 KLHL2O95198 593 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 ALDH1B1P30837 517 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 ITKQ08881 620 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 PGBD1Q96JS3 809 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 ADGRA3Q8IWK6 1321 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 SLC7A3Q8WY07 619 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 AMNQ9BXJ7 453 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 OLFML3Q9NRN5 406 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 TBK1Q9UHD2 729 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 PARP3Q9Y6F1 533 aa14.19□□□□□ -0.14
COL6A3-209ENST00000472056 DCAF15Q66K64 600 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 MMS19Q96T76 1030 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 TRPM1Q7Z4N2 1603 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 DDB1Q16531 1140 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 NGLY1Q96IV0 654 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 EPAS1Q99814 870 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 KIAA1024Q9UPX6 916 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 PRDM15P57071 1507 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-209ENST00000472056 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.18□□□□□ -0.14
COL6A3-209ENST00000472056 SH3GL2Q99962 352 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 UVRAGQ9P2Y5 699 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 HP1BP3Q5SSJ5 553 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-209ENST00000472056 FRA10AC1Q70Z53 315 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 PDLIM2Q96JY6 352 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 ADCY10Q96PN6 1610 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 PTPRTO14522 1441 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 IFNAR1P17181 557 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 EFHBQ8N7U6 833 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 PMS2P54278 862 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 PCYOX1LQ8NBM8 494 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 NEURL1BA8MQ27 555 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 MYCLP12524 364 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-209ENST00000472056 MXI1P50539 228 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 CTSWP56202 376 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 CYTH2Q99418 400 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 FRMD8Q9BZ67 464 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-209ENST00000472056 EPC1Q9H2F5 836 aa14.18□□□□□ -0.14
COL6A3-209ENST00000472056 PRR23D1E9PI22 279 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-209ENST00000472056 MAFGO15525 162 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 PRR23D2P0DMB1 279 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-209ENST00000472056 CYP2C19P33261 490 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 ARFIP2P53365 341 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 ALKBH5Q6P6C2 394 aaKnown RBP14.17□□□□□ -0.14
COL6A3-209ENST00000472056 TSPYL6Q8N831 410 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 INTUQ9ULD6 942 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 CFBP00751 764 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 SAT1P21673 171 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 NCAPG2Q86XI2 1143 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 HNRNPLLQ8WVV9 542 aaKnown RBP14.17□□□□□ -0.14
COL6A3-209ENST00000472056 USP15Q9Y4E8 981 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-209ENST00000472056 MLH3Q9UHC1 1453 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 UBN2Q6ZU65 1347 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 PPP1R37O75864 691 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 ZNF280CQ8ND82 737 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 TNKSO95271 1327 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 XKR9Q5GH70 373 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 PLD3Q8IV08 490 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 GLG1Q92896 1179 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 NCLNQ969V3 563 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 WDR47O94967 919 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 ARHGAP27Q6ZUM4 889 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 ERVV-2B6SEH9 535 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 H7C0S8 307 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 ANXA1P04083 346 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 TIMM10P62072 90 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 FAM173BQ6P4H8 233 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 TMC4Q7Z404 712 aa14.17□□□□□ -0.14
COL6A3-209ENST00000472056 HIC2Q96JB3 615 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms