RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 LPIN1Q14693 890 aa14.63□□□□□ -0.07
COL28A1-206ENST00000465339 TARBP2Q15633 366 aaKnown RBP14.63□□□□□ -0.07
COL28A1-206ENST00000465339 TCTN1Q2MV58 587 aa14.63□□□□□ -0.07
COL28A1-206ENST00000465339 FBXO47Q5MNV8 452 aa14.63□□□□□ -0.07
COL28A1-206ENST00000465339 EFCAB12Q6NXP0 572 aa14.63□□□□□ -0.07
COL28A1-206ENST00000465339 HERC6Q8IVU3 1022 aa14.63□□□□□ -0.07
COL28A1-206ENST00000465339 METTL13Q8N6R0 699 aa14.63□□□□□ -0.07
COL28A1-206ENST00000465339 BANK1Q8NDB2 785 aa14.63□□□□□ -0.07
COL28A1-206ENST00000465339 IFIH1Q9BYX4 1025 aaKnown RBP14.63□□□□□ -0.07
COL28A1-206ENST00000465339 OSBPL7Q9BZF2 842 aa14.63□□□□□ -0.07
COL28A1-206ENST00000465339 PTPRSQ13332 1948 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 LAMA2P24043 3122 aaKnown RBP14.62□□□□□ -0.07
COL28A1-206ENST00000465339 SZT2Q5T011 3432 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 H3BQV1 296 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 WNT7AO00755 349 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 AMHP03971 560 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 GHRP10912 638 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 TBC1D8BQ0IIM8 1120 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 TMEM62Q0P6H9 643 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 ZNF174Q15697 407 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 TTC38Q5R3I4 469 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 LARP1BQ659C4 914 aaKnown RBP14.62□□□□□ -0.07
COL28A1-206ENST00000465339 NCAPH2Q6IBW4 605 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 TSHZ1Q6ZSZ6 1077 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 C4orf19Q8IY42 314 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 EXOC8Q8IYI6 725 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 TTYH1Q9H313 450 aaPredicted RBP14.62□□□□□ -0.07
COL28A1-206ENST00000465339 ZNF576Q9H609 170 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 ZSWIM4Q9H7M6 989 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 SLC28A3Q9HAS3 691 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 SEPT9Q9UHD8 586 aaPredicted RBP14.62□□□□□ -0.07
COL28A1-206ENST00000465339 PPME1Q9Y570 386 aa14.62□□□□□ -0.07
COL28A1-206ENST00000465339 DNM2P50570 870 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 RABGGTBP53611 331 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 CDC42EP1Q00587 391 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 ODR4Q5SWX8 454 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 MCTP1Q6DN14 999 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 ANO5Q75V66 913 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 OTUD6AQ7L8S5 288 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 LINC01465Q8N7H1 131 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 NEK9Q8TD19 979 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 FAM161BQ96MY7 647 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 MAP7D2Q96T17 732 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 JPH2Q9BR39 696 aaPredicted RBP14.61□□□□□ -0.07
COL28A1-206ENST00000465339 ZBED2Q9BTP6 218 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 TMEM60Q9H2L4 133 aa14.61□□□□□ -0.07
COL28A1-206ENST00000465339 TLL1O43897 1013 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 SLITRK3O94933 977 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 GJB5O95377 273 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 OR52Z1P0C646 297 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 CRYBB1P53674 252 aaPredicted RBP14.6□□□□□ -0.07
COL28A1-206ENST00000465339 DEFB103AP81534 67 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 MTERF2Q49AM1 385 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.6□□□□□ -0.07
COL28A1-206ENST00000465339 DYDC2Q96IM9 177 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 CEP89Q96ST8 783 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 HSD17B14Q9BPX1 270 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 EIF2AK1Q9BQI3 630 aaKnown RBP14.6□□□□□ -0.07
COL28A1-206ENST00000465339 LXNQ9BS40 222 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 FTHL17Q9BXU8 183 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 NKX2-4Q9H2Z4 354 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 SUGCTQ9HAC7 445 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 CYP26B1Q9NR63 512 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 RGL1Q9NZL6 768 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 YBX2Q9Y2T7 364 aaKnown RBP14.6□□□□□ -0.07
COL28A1-206ENST00000465339 MYO9BQ13459 2157 aa14.6□□□□□ -0.07
COL28A1-206ENST00000465339 IGKV6-21A0A0C4DH24 114 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 GPR32O75388 356 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 MAFO75444 373 aaPredicted RBP14.59□□□□□ -0.07
COL28A1-206ENST00000465339 LYPLA2O95372 231 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 VTNP04004 478 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 PDCP20941 246 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 CD52P31358 61 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 YWHABP31946 246 aaKnown RBP14.59□□□□□ -0.07
COL28A1-206ENST00000465339 TOB1P50616 345 aaPredicted RBP14.59□□□□□ -0.07
COL28A1-206ENST00000465339 CLCN3P51790 818 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 CTTNQ14247 550 aaKnown RBP14.59□□□□□ -0.07
COL28A1-206ENST00000465339 RILPL1Q5EBL4 403 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 TPH2Q8IWU9 490 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 LRRC71Q8N4P6 559 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 INTS4Q96HW7 963 aaKnown RBP14.59□□□□□ -0.07
COL28A1-206ENST00000465339 RAD9AQ99638 391 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 AGO3Q9H9G7 860 aaKnown RBP14.59□□□□□ -0.07
COL28A1-206ENST00000465339 CDHR5Q9HBB8 845 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 WRAP73Q9P2S5 460 aaPredicted RBP14.59□□□□□ -0.07
COL28A1-206ENST00000465339 PADI3Q9ULW8 664 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 AKT3Q9Y243 479 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 GINS2Q9Y248 185 aa14.59□□□□□ -0.07
COL28A1-206ENST00000465339 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.58□□□□□ -0.08
COL28A1-206ENST00000465339 K7ELQ4 463 aaPredicted RBP14.58□□□□□ -0.08
COL28A1-206ENST00000465339 LAD1O00515 517 aa14.58□□□□□ -0.08
COL28A1-206ENST00000465339 ENPP3O14638 875 aa14.58□□□□□ -0.08
COL28A1-206ENST00000465339 GPR182O15218 404 aa14.58□□□□□ -0.08
COL28A1-206ENST00000465339 RPS6KA5O75582 802 aa14.58□□□□□ -0.08
COL28A1-206ENST00000465339 XRCC6P12956 609 aaKnown RBP eCLIP14.58□□□□□ -0.08
COL28A1-206ENST00000465339 MYOGP15173 224 aa14.58□□□□□ -0.08
COL28A1-206ENST00000465339 RFC5P40937 340 aa14.58□□□□□ -0.08
COL28A1-206ENST00000465339 TECP42680 631 aa14.58□□□□□ -0.08
COL28A1-206ENST00000465339 NLRP11P59045 1033 aaKnown RBP14.58□□□□□ -0.08
COL28A1-206ENST00000465339 CYP4A11Q02928 519 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms