RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 MCAMP43121 646 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 FXR1P51114 621 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP54-208ENST00000461520 PRMT2P55345 433 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 RHBDL3P58872 404 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 ATP8B2P98198 1209 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 PICALMQ13492 652 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 SLC9C1Q4G0N8 1177 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 TTC6Q86TZ1 520 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 FTSJ3Q8IY81 847 aaKnown RBP8.87□□□□□ -0.99
USP54-208ENST00000461520 SSH3Q8TE77 659 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 ZNF384Q8TF68 577 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 DDX4Q9NQI0 724 aaKnown RBP8.87□□□□□ -0.99
USP54-208ENST00000461520 PTCH2Q9Y6C5 1203 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 ZHX2Q9Y6X8 837 aa8.87□□□□□ -0.99
USP54-208ENST00000461520 TRIOBPQ9H2D6 2365 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 A0A0G2JLL6 359 aaPredicted RBP8.86□□□□□ -0.99
USP54-208ENST00000461520 CTNND1O60716 968 aaKnown RBP8.86□□□□□ -0.99
USP54-208ENST00000461520 GLI1P08151 1106 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 MESP2Q0VG99 397 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 MOGSQ13724 837 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 GAB4Q2WGN9 574 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 TNNI3KQ59H18 835 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 TMEM67Q5HYA8 995 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 CCDC158Q5M9N0 1113 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 FASTKD5Q7L8L6 764 aaKnown RBP8.86□□□□□ -0.99
USP54-208ENST00000461520 PRRT2Q7Z6L0 340 aaPredicted RBP8.86□□□□□ -0.99
USP54-208ENST00000461520 RNF141Q8WVD5 230 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 ZNF333Q96JL9 665 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 CCDC74BQ96LY2 380 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 PARK7Q99497 189 aaKnown RBP8.86□□□□□ -0.99
USP54-208ENST00000461520 KIF2CQ99661 725 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 GPR62Q9BZJ7 368 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 ARHGAP39Q9C0H5 1083 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 ADAMTS10Q9H324 1103 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 TRIT1Q9H3H1 467 aaKnown RBP8.86□□□□□ -0.99
USP54-208ENST00000461520 GPATCH2Q9NW75 528 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 RAI14Q9P0K7 980 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 LRP2BPQ9P2M1 347 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 CPA4Q9UI42 421 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 KCNH3Q9ULD8 1083 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 AFG3L2Q9Y4W6 797 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 FPGT-TNNI3KV9GXZ4 949 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 MYH2Q9UKX2 1941 aa8.86□□□□□ -0.99
USP54-208ENST00000461520 ADGRA2Q96PE1 1338 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 COL2A1P02458 1487 aaPredicted RBP8.85□□□□□ -0.99
USP54-208ENST00000461520 SURF6O75683 361 aaKnown RBP8.85□□□□□ -0.99
USP54-208ENST00000461520 SRFP11831 508 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 HOXD10P28358 340 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 EIF4A3P38919 411 aaKnown RBP8.85□□□□□ -0.99
USP54-208ENST00000461520 HK2P52789 917 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 ERVFC1P60507 584 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 JAG1P78504 1218 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 OS9Q13438 667 aaPredicted RBP8.85□□□□□ -0.99
USP54-208ENST00000461520 MRPL58Q14197 206 aaKnown RBP8.85□□□□□ -0.99
USP54-208ENST00000461520 SLC4A8Q2Y0W8 1093 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 TTC39AQ5SRH9 613 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 KSR1Q8IVT5 923 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 ITPRIPQ8IWB1 547 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 PHACTR4Q8IZ21 702 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 ZNF512BQ96KM6 892 aaPredicted RBP8.85□□□□□ -0.99
USP54-208ENST00000461520 KREMEN1Q96MU8 473 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 NOL10Q9BSC4 688 aaKnown RBP8.85□□□□□ -0.99
USP54-208ENST00000461520 OSBPL5Q9H0X9 879 aaPredicted RBP8.85□□□□□ -0.99
USP54-208ENST00000461520 BRMS1Q9HCU9 246 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 FAM53CQ9NYF3 392 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 GGT7Q9UJ14 662 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 SLC45A1Q9Y2W3 748 aa8.85□□□□□ -0.99
USP54-208ENST00000461520 NOP58Q9Y2X3 529 aaKnown RBP8.85□□□□□ -0.99
USP54-208ENST00000461520 DOCK2Q92608 1830 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 ZBED9Q6R2W3 1325 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 AK9Q5TCS8 1911 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 BAG3O95817 575 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 PSMC4P43686 418 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 MPZL3Q6UWV2 235 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 PRR23BQ6ZRT6 265 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 TSPYL5Q86VY4 417 aaPredicted RBP8.84□□□□□ -0.99
USP54-208ENST00000461520 TEX11Q8IYF3 940 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 SH3TC2Q8TF17 1288 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 CCDC120Q96HB5 630 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 DHX36Q9H2U1 1008 aaKnown RBP8.84□□□□□ -0.99
USP54-208ENST00000461520 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.84□□□□□ -0.99
USP54-208ENST00000461520 SRRDQ9UH36 339 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 HERC5Q9UII4 1024 aaKnown RBP8.84□□□□□ -0.99
USP54-208ENST00000461520 DUSP13Q9UII6 198 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 TMEM59LQ9UK28 342 aa8.84□□□□□ -0.99
USP54-208ENST00000461520 SZT2Q5T011 3432 aa8.83□□□□□ -1
USP54-208ENST00000461520 GREM1O60565 184 aa8.83□□□□□ -1
USP54-208ENST00000461520 CYP2C8P10632 490 aa8.83□□□□□ -1
USP54-208ENST00000461520 CTGFP29279 349 aa8.83□□□□□ -1
USP54-208ENST00000461520 EGR3Q06889 387 aa8.83□□□□□ -1
USP54-208ENST00000461520 NAA16Q6N069 864 aaPredicted RBP8.83□□□□□ -1
USP54-208ENST00000461520 GADL1Q6ZQY3 521 aa8.83□□□□□ -1
USP54-208ENST00000461520 PI4KBQ9UBF8 816 aa8.83□□□□□ -1
USP54-208ENST00000461520 SUPT16HQ9Y5B9 1047 aaKnown RBP8.83□□□□□ -1
USP54-208ENST00000461520 PCDHB14Q9Y5E9 798 aa8.83□□□□□ -1
USP54-208ENST00000461520 TRIM75PA6NK02 468 aa8.82□□□□□ -1
USP54-208ENST00000461520 SLC22A31A6NKX4 558 aa8.82□□□□□ -1
USP54-208ENST00000461520 H0YGN5 161 aa8.82□□□□□ -1
USP54-208ENST00000461520 GBP1P32455 592 aa8.82□□□□□ -1
USP54-208ENST00000461520 ARSHQ5FYA8 562 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms