RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 GOLGA6DP0CG33 693 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 ZSCAN26Q16670 478 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 CFAP58Q5T655 872 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 NLRX1Q86UT6 975 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 BAP1Q92560 729 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 MKL1Q969V6 931 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 GMCL1Q96IK5 515 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 METTL14Q9HCE5 456 aaKnown RBP13.05□□□□□ -0.32
SMPD4-213ENST00000454468 GOLGA6AQ9NYA3 693 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 ZHX2Q9Y6X8 837 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 LTBP4Q8N2S1 1624 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 MYH10P35580 1976 aa13.05□□□□□ -0.32
SMPD4-213ENST00000454468 BCORQ6W2J9 1755 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 WNT10BO00744 389 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 HMGCS2P54868 508 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 BIRC3Q13489 604 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 TATDN1Q6P1N9 297 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 AFAP1L1Q8TED9 768 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 UBLCP1Q8WVY7 318 aaPredicted RBP13.04□□□□□ -0.32
SMPD4-213ENST00000454468 DDX47Q9H0S4 455 aaKnown RBP13.04□□□□□ -0.32
SMPD4-213ENST00000454468 NUCKS1Q9H1E3 243 aaKnown RBP13.04□□□□□ -0.32
SMPD4-213ENST00000454468 ZNRF3Q9ULT6 936 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 L1RE1Q9UN81 338 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 TMX2Q9Y320 296 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 KLRG2A4D1S0 409 aaPredicted RBP13.04□□□□□ -0.32
SMPD4-213ENST00000454468 GOLGA6L10A6NI86 522 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 PEX10O60683 326 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 PON1P27169 355 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 CAP2P40123 477 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 SLC18A3Q16572 532 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 OTOP1Q7RTM1 612 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 ZNF571Q7Z3V5 609 aaPredicted RBP13.04□□□□□ -0.32
SMPD4-213ENST00000454468 DDX42Q86XP3 938 aaKnown RBP eCLIP13.04□□□□□ -0.32
SMPD4-213ENST00000454468 WRNIP1Q96S55 665 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 PAGR1Q9BTK6 254 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 ACP6Q9NPH0 428 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 BAG6P46379 1132 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 RPS6P62753 249 aaKnown RBP13.04□□□□□ -0.32
SMPD4-213ENST00000454468 MESDQ14696 234 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 CYFIP1Q7L576 1253 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 CEP170P1Q96L14 293 aa13.04□□□□□ -0.32
SMPD4-213ENST00000454468 AMPD2Q01433 879 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 IFFO1Q0D2I5 559 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 RNF207Q6ZRF8 634 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 CCDC25Q86WR0 208 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 C10orf67Q8IYJ2 551 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 PRPF38AQ8NAV1 312 aaKnown RBP13.03□□□□□ -0.32
SMPD4-213ENST00000454468 TAOK3Q9H2K8 898 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 RPAP3Q9H6T3 665 aaPredicted RBP13.03□□□□□ -0.32
SMPD4-213ENST00000454468 A0A1W2PQJ5 194 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 HDLBPQ00341 1268 aaKnown RBP13.03□□□□□ -0.32
SMPD4-213ENST00000454468 BAATQ14032 418 aaPredicted RBP13.03□□□□□ -0.32
SMPD4-213ENST00000454468 KLHDC7AQ5VTJ3 777 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 MYOZ2Q9NPC6 264 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 EMSYQ7Z589 1322 aa13.03□□□□□ -0.32
SMPD4-213ENST00000454468 PDXKO00764 312 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 EVI5O60447 810 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 TNNC1P63316 161 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 IFI16Q16666 785 aaKnown RBP13.02□□□□□ -0.32
SMPD4-213ENST00000454468 EPC2Q52LR7 807 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 MUM1L1Q5H9M0 696 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 SEPT14Q6ZU15 432 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 MICALL2Q8IY33 904 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 GMCL1P1Q8NEA9 526 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 FAM76AQ8TAV0 307 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 POMGNT1Q8WZA1 660 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 ATG4CQ96DT6 458 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 POP1Q99575 1024 aaKnown RBP13.02□□□□□ -0.32
SMPD4-213ENST00000454468 CBWD1Q9BRT8 395 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 KCTD10Q9H3F6 313 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 CWC15Q9P013 229 aaKnown RBP13.02□□□□□ -0.32
SMPD4-213ENST00000454468 PIM2Q9P1W9 311 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 CALCOCO1Q9P1Z2 691 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 SEPT9Q9UHD8 586 aaPredicted RBP13.02□□□□□ -0.32
SMPD4-213ENST00000454468 ATMINO43313 823 aaPredicted RBP13.02□□□□□ -0.32
SMPD4-213ENST00000454468 NOL4O94818 638 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 CARSP49589 748 aaKnown RBP13.02□□□□□ -0.32
SMPD4-213ENST00000454468 MTERF2Q49AM1 385 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 NBPF12Q5TAG4 269 aaPredicted RBP13.02□□□□□ -0.32
SMPD4-213ENST00000454468 PAPD7Q5XG87 772 aaKnown RBP13.02□□□□□ -0.32
SMPD4-213ENST00000454468 IFT20Q8IY31 132 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 OSGEPQ9NPF4 335 aa13.02□□□□□ -0.32
SMPD4-213ENST00000454468 ECM29Q5VYK3 1845 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 MYH1P12882 1939 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 ANO9A1A5B4 782 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 HNRNPDLO14979 420 aaKnown RBP13.02□□□□□ -0.33
SMPD4-213ENST00000454468 SPOPO43791 374 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 CALCAP01258 141 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 GAP43P17677 238 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 C2CD6Q53TS8 623 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 SNRNP48Q6IEG0 339 aaKnown RBP13.02□□□□□ -0.33
SMPD4-213ENST00000454468 DLK2Q6UY11 383 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 IQCDQ96DY2 449 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 TLR10Q9BXR5 811 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 STIM2Q9P246 746 aa13.02□□□□□ -0.33
SMPD4-213ENST00000454468 OPLAHO14841 1288 aa13.01□□□□□ -0.33
SMPD4-213ENST00000454468 IBSPP21815 317 aaPredicted RBP13.01□□□□□ -0.33
SMPD4-213ENST00000454468 SMTNP53814 917 aa13.01□□□□□ -0.33
SMPD4-213ENST00000454468 TUBB4BP68371 445 aa13.01□□□□□ -0.33
SMPD4-213ENST00000454468 TRADDQ15628 312 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms