RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ACTRT1Q8TDG2 376 aa17.91■□□□□ 0.46
CLCNKA-203ENST00000439316 SCFD2Q8WU76 684 aa17.91■□□□□ 0.46
CLCNKA-203ENST00000439316 ZBED3Q96IU2 234 aaPredicted RBP17.91■□□□□ 0.46
CLCNKA-203ENST00000439316 ISCUQ9H1K1 167 aa17.91■□□□□ 0.46
CLCNKA-203ENST00000439316 TAF1DQ9H5J8 278 aaPredicted RBP17.91■□□□□ 0.46
CLCNKA-203ENST00000439316 SIX2Q9NPC8 291 aa17.91■□□□□ 0.46
CLCNKA-203ENST00000439316 TYW1Q9NV66 732 aaKnown RBP17.91■□□□□ 0.46
CLCNKA-203ENST00000439316 DNM3Q9UQ16 869 aa17.91■□□□□ 0.46
CLCNKA-203ENST00000439316 ASTN1O14525 1302 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 COL2A1P02458 1487 aaPredicted RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 EGFRP00533 1210 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 XRCC5P13010 732 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 RPS12P25398 132 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 GMPSP49915 693 aaPredicted RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 JAM2P57087 298 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 CERKLQ49MI3 558 aaPredicted RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 PRR16Q569H4 304 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 TTC19Q6DKK2 380 aaPredicted RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 CALR3Q96L12 384 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 EFCC1Q9HA90 598 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 NYAP2Q9P242 653 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 STK24Q9Y6E0 443 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 CNTNAP1P78357 1384 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 MEIS1O00470 390 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 ZEB2O60315 1214 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 AKAP3O75969 853 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 EEF2P13639 858 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 ECHS1P30084 290 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 RNASE9P60153 205 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 ERVK-9P63128 1117 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 TRADDQ15628 312 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 SKIDA1Q1XH10 827 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 SHROOM1Q2M3G4 852 aaPredicted RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 RBM26Q5T8P6 1007 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 SLFN13Q68D06 897 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 KCTD16Q68DU8 428 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 TATDN1Q6P1N9 297 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 ALKBH5Q6P6C2 394 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 KLHL7Q8IXQ5 586 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 FAM151AQ8WW52 585 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 SYT17Q9BSW7 474 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 METTL14Q9HCE5 456 aaKnown RBP17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 FAM169AQ9Y6X4 670 aa17.9■□□□□ 0.46
CLCNKA-203ENST00000439316 ZNF541Q9H0D2 1346 aa17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 DICER1Q9UPY3 1922 aaKnown RBP17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 FLOT1O75955 427 aa17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 SBF1O95248 1867 aa17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 NR3C1P04150 777 aa17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 NOP2P46087 812 aaKnown RBP17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 ZNF280AP59817 542 aaPredicted RBP17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 CUL1Q13616 776 aa17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 TPCN2Q8NHX9 752 aa17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 AJAP1Q9UKB5 411 aaPredicted RBP17.89■□□□□ 0.45
CLCNKA-203ENST00000439316 ATXN2Q99700 1313 aaKnown RBP17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 A0A0A6YYK5 440 aaPredicted RBP17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 SREBF1P36956 1147 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 DCAF17Q5H9S7 520 aaPredicted RBP17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 FKBP1CQ5VVH2 108 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 LRIG3Q6UXM1 1119 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 SLFN11Q7Z7L1 901 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 MICALL2Q8IY33 904 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 SLC35C1Q96A29 364 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 ATP6V1G3Q96LB4 118 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 RNPC3Q96LT9 517 aaKnown RBP17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 FAM20AQ96MK3 541 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 GTPBP10A4D1E9 387 aaKnown RBP17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 HMGB1P1B2RPK0 211 aaPredicted RBP17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 FAM86B1E9PN63 330 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 PGRMC1O00264 195 aaKnown RBP17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 CEP104O60308 925 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 FAM86B2P0C5J1 330 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 NR1D1P20393 614 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 RPL13P26373 211 aaKnown RBP17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 MMP14P50281 582 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 ATP1A2P50993 1020 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 SAMD7Q7Z3H4 446 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 TMEM39BQ9GZU3 492 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 GOLPH3Q9H4A6 298 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 RABEP2Q9H5N1 569 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 CNOT7Q9UIV1 285 aaKnown RBP17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 VAV3Q9UKW4 847 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 INTUQ9ULD6 942 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 STXBP5LQ9Y2K9 1186 aa17.88■□□□□ 0.45
CLCNKA-203ENST00000439316 RSPH10B2B2RC85 870 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 GDF11O95390 407 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 RSPH10BP0C881 870 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 LMNB1P20700 586 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 CIITAP33076 1130 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 CDAN1Q8IWY9 1227 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 METTL13Q8N6R0 699 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 RUSC1Q9BVN2 902 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 AMNQ9BXJ7 453 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 SCAF8Q9UPN6 1271 aaKnown RBP17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 PLAAQ9Y263 795 aa17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 NOC2LQ9Y3T9 749 aaKnown RBP17.87■□□□□ 0.45
CLCNKA-203ENST00000439316 VGLL3A8MV65 326 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 NDUFAB1O14561 156 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 RAD21O60216 631 aa17.86■□□□□ 0.45
CLCNKA-203ENST00000439316 FOSP01100 380 aaPredicted RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms