RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ERVK-9P63128 1117 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 KLRC3Q07444 240 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 PDCLQ13371 301 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 KCTD16Q68DU8 428 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 MICALCLQ6ZW33 695 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.31□□□□□ -0.44
USP4-205ENST00000431357 METTL13Q8N6R0 699 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 BORCS6Q96GS4 357 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 EIF2AK1Q9BQI3 630 aaKnown RBP12.31□□□□□ -0.44
USP4-205ENST00000431357 PAGR1Q9BTK6 254 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 EPN3Q9H201 632 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 BHMT2Q9H2M3 363 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 TMBIM4Q9HC24 238 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 TTC7AQ9ULT0 858 aaPredicted RBP12.31□□□□□ -0.44
USP4-205ENST00000431357 PLAAQ9Y263 795 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 TMCO5BA8MYB1 307 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 PIK3CDO00329 1044 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 SART1O43290 800 aaKnown RBP12.31□□□□□ -0.44
USP4-205ENST00000431357 FAM13AO94988 1023 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 NPR1P16066 1061 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 CLUL1Q15846 466 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 PPP2R5EQ16537 467 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 DOK7Q18PE1 504 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 BTNL9Q6UXG8 535 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 RUFY4Q6ZNE9 571 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 STXBP4Q6ZWJ1 553 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 PODNQ7Z5L7 613 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 SH2D3CQ8N5H7 860 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 RNPC3Q96LT9 517 aaKnown RBP12.31□□□□□ -0.44
USP4-205ENST00000431357 P2RX7Q99572 595 aaKnown RBP12.31□□□□□ -0.44
USP4-205ENST00000431357 STK33Q9BYT3 514 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 DONSONQ9NYP3 566 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 SEL1LQ9UBV2 794 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 AMFRQ9UKV5 643 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 SYNPO2Q9UMS6 1093 aa12.31□□□□□ -0.44
USP4-205ENST00000431357 NOC2LQ9Y3T9 749 aaKnown RBP12.31□□□□□ -0.44
USP4-205ENST00000431357 GCOM1H8Y6P7 765 aaPredicted RBP12.3□□□□□ -0.44
USP4-205ENST00000431357 KRIT1O00522 736 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 DDX3XO00571 662 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP4-205ENST00000431357 MYZAPP0CAP1 466 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 LSP1P33241 339 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 MDH1P40925 334 aaKnown RBP12.3□□□□□ -0.44
USP4-205ENST00000431357 CASP4P49662 377 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 BIRC3Q13489 604 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 SKIDA1Q1XH10 827 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 CEP85LQ5SZL2 805 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 RINT1Q6NUQ1 792 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 SIAH1Q8IUQ4 282 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 ZFPM1Q8IX07 1006 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 FAM186BQ8IYM0 893 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 HES6Q96HZ4 224 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 RUSC1Q9BVN2 902 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 FAM114A2Q9NRY5 505 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 GGA2Q9UJY4 613 aa12.3□□□□□ -0.44
USP4-205ENST00000431357 RSPH10B2B2RC85 870 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 TGFB1I1O43294 461 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 PPP1R37O75864 691 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 ERLIN2O94905 339 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 TMEM253P0C7T8 217 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 RSPH10BP0C881 870 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 BMP3P12645 472 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 ECHS1P30084 290 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 SOX5P35711 763 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 HSD17B3P37058 310 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 ATP1A2P50993 1020 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 IKQ13123 557 aaPredicted RBP12.29□□□□□ -0.44
USP4-205ENST00000431357 ABCB5Q2M3G0 1257 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 SPDYCQ5MJ68 293 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 NT5DC3Q86UY8 548 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 PACS2Q86VP3 889 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 MICALL1Q8N3F8 863 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 SLC30A5Q8TAD4 765 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 U2AF1L4Q8WU68 220 aaKnown RBP12.29□□□□□ -0.44
USP4-205ENST00000431357 PCDHB13Q9Y5F0 798 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 NCANO14594 1321 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 DDTLA6NHG4 134 aaPredicted RBP12.29□□□□□ -0.44
USP4-205ENST00000431357 ANKRD65E5RJM6 399 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 CLIC2O15247 247 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 KIAA0754O94854 1291 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 NDUFB10O96000 172 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 INPP5BP32019 993 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 CYP4A11Q02928 519 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 ITGB3BPQ13352 177 aaPredicted RBP12.29□□□□□ -0.44
USP4-205ENST00000431357 PPP2R5AQ15172 486 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 PTGISQ16647 500 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 USH1GQ495M9 461 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 AGBL2Q5U5Z8 902 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 TTC19Q6DKK2 380 aaPredicted RBP12.29□□□□□ -0.44
USP4-205ENST00000431357 DAAM2Q86T65 1068 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 RPAINQ86UA6 219 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 SEC14L1Q92503 715 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 GJD4Q96KN9 370 aaPredicted RBP12.29□□□□□ -0.44
USP4-205ENST00000431357 NAP1L3Q99457 506 aaPredicted RBP12.29□□□□□ -0.44
USP4-205ENST00000431357 HSD17B14Q9BPX1 270 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 KCND2Q9NZV8 630 aa12.29□□□□□ -0.44
USP4-205ENST00000431357 ONECUT3O60422 494 aaPredicted RBP12.28□□□□□ -0.44
USP4-205ENST00000431357 EVI5O60447 810 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 TRIM37O94972 964 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 RFX1P22670 979 aa12.28□□□□□ -0.44
USP4-205ENST00000431357 GALCP54803 685 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms