RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 SAP30BPQ9UHR5 308 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SERPINI2O75830 405 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SLC16A2P36021 539 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ARPP19P56211 112 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ARHGEF6Q15052 776 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ASMTLO95671 621 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MARK3P27448 753 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PTGS2P35354 604 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CEBPAP49715 358 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CEP78Q5JTW2 689 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CYP4V2Q6ZWL3 525 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MLKLQ8NB16 471 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 FANCGO15287 622 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ANKDD1AQ495B1 522 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SATL1Q86VE3 508 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RNPEPL1Q9HAU8 725 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ABCC10Q5T3U5 1492 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CCRL2O00421 344 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TJP3O95049 919 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 FYNP06241 537 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PRKACAP17612 351 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SPRED3Q2MJR0 410 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 IYDQ6PHW0 289 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 DDX42Q86XP3 938 aaKnown RBP eCLIP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TMEM237Q96Q45 408 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CTNNAL1Q9UBT7 734 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 USTQ9Y2C2 406 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 DAPK3O43293 454 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SEMA3DO95025 777 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 METTL24Q5JXM2 366 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 FERD3LQ96RJ6 166 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 Q9H521 79 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 NDE1Q9NXR1 346 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ECE1P42892 770 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 HAND2P61296 217 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 HSPBAP1Q96EW2 488 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CHP1Q99653 195 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ZNF287Q9HBT7 754 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SBNO2Q9Y2G9 1366 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RASGRF2O14827 1237 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CIITAP33076 1130 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RBBP8NLQ8NC74 664 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CNBD2Q96M20 576 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 FAM227BQ96M60 508 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CDK19Q9BWU1 502 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CDK12Q9NYV4 1490 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ITSN1Q15811 1721 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 EDC4Q6P2E9 1401 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 POGZQ7Z3K3 1410 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MFAP3LO75121 409 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 GSTA1P08263 222 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 BTN2A1Q7KYR7 527 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RRAGAQ7L523 313 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RSPH1Q8WYR4 309 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ZSWIM6Q9HCJ5 1215 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ARPP21Q9UBL0 812 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ERMNQ8TAM6 284 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ATP2A3Q93084 1043 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 GPBP1L1Q9HC44 474 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 BMP2KQ9NSY1 1161 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MAP3K5Q99683 1374 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 USP12O75317 370 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ENO2P09104 434 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 KRT20P35900 424 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 VHLP40337 213 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 THOC5Q13769 683 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TBC1D10BQ4KMP7 808 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 FMR1NBQ8N0W7 255 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 BLZF1Q9H2G9 400 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SACM1LQ9NTJ5 587 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 EMILIN1Q9Y6C2 1016 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RPAP1Q9BWH6 1393 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 GYG2O15488 501 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CHEK2O96017 543 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 EIF4A3P38919 411 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MLLT3P42568 568 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MORC3Q14149 939 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 C15orf59Q2T9L4 293 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TRAPPC11Q7Z392 1133 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PAGE5Q96GU1 130 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TRPC7Q9HCX4 862 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 UTP11Q9Y3A2 253 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 WDR7Q9Y4E6 1490 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 GLI1P08151 1106 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC166P0CW27 439 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PHBP35232 272 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 BLVRAP53004 296 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 C21orf59P57076 290 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PRR16Q569H4 304 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC62Q6P9F0 684 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MICU3Q86XE3 530 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 LRRC37BQ96QE4 947 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC177Q9NQR7 707 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 DDX28Q9NUL7 540 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ITIH4Q14624 930 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 GLE1Q53GS7 698 aaKnown RBP3.65□□□□□ -1.82
SYNE1-212ENST00000423061 SPATA1Q5VX52 437 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 MARK2Q7KZI7 788 aaKnown RBP3.65□□□□□ -1.82
SYNE1-212ENST00000423061 COX4I2Q96KJ9 171 aa3.65□□□□□ -1.82
SYNE1-212ENST00000423061 SNTNA6NMZ2 147 aa3.65□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms