RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 NR3C1P04150 777 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 MUTP22033 750 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 LMNB2Q03252 620 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 TRAF1Q13077 416 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 GIT2Q14161 759 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 ITIH4Q14624 930 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 PREPLQ4J6C6 727 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-207ENST00000422797 ANKRD20A8PQ5CZ79 823 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 POTEBQ6S5H4 581 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 DAAM2Q86T65 1068 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 RHOT2Q8IXI1 618 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 NEK9Q8TD19 979 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 UPF1Q92900 1129 aaKnown RBP eCLIP11.97□□□□□ -0.49
LIMS1-207ENST00000422797 CHMP6Q96FZ7 201 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 SGSM3Q96HU1 749 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 POLR3CQ9BUI4 534 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-207ENST00000422797 STK33Q9BYT3 514 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 ANO3Q9BYT9 981 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 TXLNGYQ9BZA5 131 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 TAOK3Q9H2K8 898 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 CENPHQ9H3R5 247 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 RABEP2Q9H5N1 569 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 CCDC134Q9H6E4 229 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 SLC40A1Q9NP59 571 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 GCNT4Q9P109 453 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 CNOT7Q9UIV1 285 aaKnown RBP11.97□□□□□ -0.49
LIMS1-207ENST00000422797 PACSIN2Q9UNF0 486 aaPredicted RBP11.97□□□□□ -0.49
LIMS1-207ENST00000422797 JAG2Q9Y219 1238 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 RTCBQ9Y3I0 505 aaKnown RBP11.97□□□□□ -0.49
LIMS1-207ENST00000422797 SYNGAP1Q96PV0 1343 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 MYH7BA7E2Y1 1941 aa11.97□□□□□ -0.49
LIMS1-207ENST00000422797 PODXLO00592 558 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 C21orf2O43822 256 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 KIF1CO43896 1103 aaKnown RBP11.96□□□□□ -0.49
LIMS1-207ENST00000422797 AGTP01019 485 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 HLA-DOAP06340 250 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 SOX5P35711 763 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 PSMC2P35998 433 aaKnown RBP11.96□□□□□ -0.49
LIMS1-207ENST00000422797 SEC24CP53992 1094 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 POU5F1Q01860 360 aaKnown RBP11.96□□□□□ -0.49
LIMS1-207ENST00000422797 DHX9Q08211 1270 aaKnown RBP11.96□□□□□ -0.49
LIMS1-207ENST00000422797 ADCY2Q08462 1091 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 XRCC4Q13426 336 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 MYBPC2Q14324 1141 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 PPP2R5AQ15172 486 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 UBE2SQ16763 222 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 C6orf118Q5T5N4 469 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 ERMARDQ5T6L9 678 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 C11orf63Q6NUN7 778 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 CPLX4Q7Z7G2 160 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 CCDC197Q8NCU1 140 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 SLC30A5Q8TAD4 765 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 SLC35C1Q96A29 364 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 ERP44Q9BS26 406 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 DDX47Q9H0S4 455 aaKnown RBP11.96□□□□□ -0.49
LIMS1-207ENST00000422797 GPCPD1Q9NPB8 672 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 SIX2Q9NPC8 291 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 MTRF1LQ9UGC7 380 aaKnown RBP11.96□□□□□ -0.49
LIMS1-207ENST00000422797 SERPINB13Q9UIV8 391 aa11.96□□□□□ -0.49
LIMS1-207ENST00000422797 NOVA2Q9UNW9 492 aaKnown RBP11.96□□□□□ -0.49
LIMS1-207ENST00000422797 QSER1Q2KHR3 1735 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 CFAP73A6NFT4 308 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 DAPK3O43293 454 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 UFL1O94874 794 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 EYA4O95677 639 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 ATXN8OSP0DMR3 200 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 EZRP15311 586 aaKnown RBP11.96□□□□□ -0.5
LIMS1-207ENST00000422797 SLC9A1P19634 815 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 CHRNA3P32297 505 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 DR1Q01658 176 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 SLMAPQ14BN4 828 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 ARSHQ5FYA8 562 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 MFSD14BQ5SR56 506 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 WLSQ5T9L3 541 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 DENND2CQ68D51 928 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 DUPD1Q68J44 220 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 DPP8Q6V1X1 898 aaPredicted RBP11.96□□□□□ -0.5
LIMS1-207ENST00000422797 SFR1Q86XK3 245 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 COL23A1Q86Y22 540 aaPredicted RBP11.96□□□□□ -0.5
LIMS1-207ENST00000422797 PARP9Q8IXQ6 854 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 LRRC47Q8N1G4 583 aaKnown RBP11.96□□□□□ -0.5
LIMS1-207ENST00000422797 UBL4BQ8N7F7 174 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 GIMAP7Q8NHV1 300 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 ETNPPLQ8TBG4 499 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 CCHCR1Q8TD31 782 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 U2AF1L4Q8WU68 220 aaKnown RBP11.96□□□□□ -0.5
LIMS1-207ENST00000422797 RAPGEF5Q92565 580 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 RPGRQ92834 1020 aaKnown RBP11.96□□□□□ -0.5
LIMS1-207ENST00000422797 RBM17Q96I25 401 aaKnown RBP11.96□□□□□ -0.5
LIMS1-207ENST00000422797 XPO6Q96QU8 1125 aaKnown RBP11.96□□□□□ -0.5
LIMS1-207ENST00000422797 PLCD4Q9BRC7 762 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 AP1M1Q9BXS5 423 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 PABPC3Q9H361 631 aaKnown RBP11.96□□□□□ -0.5
LIMS1-207ENST00000422797 KCND2Q9NZV8 630 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 TBC1D7Q9P0N9 293 aa11.96□□□□□ -0.5
LIMS1-207ENST00000422797 GREB1LQ9C091 1923 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-207ENST00000422797 ANKRD62A6NC57 917 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 DDX3XO00571 662 aaKnown RBP eCLIP11.95□□□□□ -0.5
LIMS1-207ENST00000422797 TTI1O43156 1089 aa11.95□□□□□ -0.5
LIMS1-207ENST00000422797 MED24O75448 989 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms