RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 GBP2P32456 591 aaPredicted RBP23.09■■□□□ 1.29
USP48-205ENST00000421625 DR1Q01658 176 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 ARSHQ5FYA8 562 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 MEX3CQ5U5Q3 659 aaKnown RBP23.09■■□□□ 1.29
USP48-205ENST00000421625 ELAC2Q9BQ52 826 aaKnown RBP23.09■■□□□ 1.29
USP48-205ENST00000421625 KIF13BQ9NQT8 1826 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 A0A0A6YYK5 440 aaPredicted RBP23.09■■□□□ 1.29
USP48-205ENST00000421625 MMP13P45452 471 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 PMS2P54278 862 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 EPHA7Q15375 998 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 TCERG1LQ5VWI1 586 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 DUPD1Q68J44 220 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 PIGWQ7Z7B1 504 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 TBC1D1Q86TI0 1168 aaPredicted RBP23.09■■□□□ 1.29
USP48-205ENST00000421625 PNMA8AQ86V59 439 aaPredicted RBP23.09■■□□□ 1.29
USP48-205ENST00000421625 TEX11Q8IYF3 940 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 ANKRD2Q9GZV1 360 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 RAB17Q9H0T7 212 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 GFPT2O94808 682 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 PLTPP55058 493 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 PTENP60484 403 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 HYIQ5T013 277 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 UHMK1Q8TAS1 419 aaKnown RBP23.09■■□□□ 1.29
USP48-205ENST00000421625 LNX1Q8TBB1 728 aaPredicted RBP23.09■■□□□ 1.29
USP48-205ENST00000421625 FAXDC2Q96IV6 333 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 PRMT1Q99873 361 aaKnown RBP23.09■■□□□ 1.29
USP48-205ENST00000421625 NT5C3AQ9H0P0 336 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 GPCPD1Q9NPB8 672 aa23.09■■□□□ 1.29
USP48-205ENST00000421625 IGSF9BQ9UPX0 1349 aa23.08■■□□□ 1.29
USP48-205ENST00000421625 DDX3YO15523 660 aaKnown RBP23.08■■□□□ 1.29
USP48-205ENST00000421625 JAM2P57087 298 aa23.08■■□□□ 1.29
USP48-205ENST00000421625 ZNF211Q13398 564 aaPredicted RBP23.08■■□□□ 1.29
USP48-205ENST00000421625 CRYMQ14894 314 aa23.08■■□□□ 1.29
USP48-205ENST00000421625 FRMD5Q7Z6J6 570 aa23.08■■□□□ 1.29
USP48-205ENST00000421625 LRRC47Q8N1G4 583 aaKnown RBP23.08■■□□□ 1.29
USP48-205ENST00000421625 NEK9Q8TD19 979 aa23.08■■□□□ 1.29
USP48-205ENST00000421625 ERP44Q9BS26 406 aa23.08■■□□□ 1.29
USP48-205ENST00000421625 ZNF287Q9HBT7 754 aa23.08■■□□□ 1.29
USP48-205ENST00000421625 SNX24Q9Y343 169 aa23.08■■□□□ 1.29
USP48-205ENST00000421625 ASAP2O43150 1006 aa23.08■■□□□ 1.28
USP48-205ENST00000421625 NUDT17P0C025 328 aa23.08■■□□□ 1.28
USP48-205ENST00000421625 XRCC5P13010 732 aaKnown RBP23.08■■□□□ 1.28
USP48-205ENST00000421625 HOXD13P35453 343 aa23.08■■□□□ 1.28
USP48-205ENST00000421625 STAT3P40763 770 aa23.08■■□□□ 1.28
USP48-205ENST00000421625 KLRC3Q07444 240 aa23.08■■□□□ 1.28
USP48-205ENST00000421625 PPP4R3CPQ6ZMV5 832 aa23.08■■□□□ 1.28
USP48-205ENST00000421625 PABPC3Q9H361 631 aaKnown RBP23.08■■□□□ 1.28
USP48-205ENST00000421625 KDM3AQ9Y4C1 1321 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 PPP1R11O60927 126 aaPredicted RBP23.07■■□□□ 1.28
USP48-205ENST00000421625 AKAP3O75969 853 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 NAA25Q14CX7 972 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 DENND2CQ68D51 928 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 VPS36Q86VN1 386 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 SLC35G2Q8TBE7 412 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 ABCF3Q9NUQ8 709 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 AGAP1Q9UPQ3 857 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 DAAM1Q9Y4D1 1078 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 IRS2Q9Y4H2 1338 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 IFNAR2P48551 515 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 EIF6P56537 245 aaKnown RBP23.07■■□□□ 1.28
USP48-205ENST00000421625 PPP4CP60510 307 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 CLEC10AQ8IUN9 316 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 OLIG1Q8TAK6 271 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 FBXO25Q8TCJ0 367 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 GCNT4Q9P109 453 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 SRP68Q9UHB9 627 aaKnown RBP23.07■■□□□ 1.28
USP48-205ENST00000421625 TTC7AQ9ULT0 858 aaPredicted RBP23.07■■□□□ 1.28
USP48-205ENST00000421625 L3MBTL1Q9Y468 752 aa23.07■■□□□ 1.28
USP48-205ENST00000421625 CCDC189A1A4V9 331 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 POTEFA5A3E0 1075 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 hCG_1984214I3L0E3 225 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 POTEIP0CG38 1075 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 ABCB4P21439 1286 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 CASP4P49662 377 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 MYO1EQ12965 1108 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 SLC29A2Q14542 456 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 ITIH4Q14624 930 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 TBC1D9BQ66K14 1250 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 POTEGQ6S5H5 508 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 POTEEQ6S8J3 1075 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 ZDHHC24Q6UX98 284 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 CLEC4GQ6UXB4 293 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 ZNF713Q8N859 430 aaPredicted RBP23.06■■□□□ 1.28
USP48-205ENST00000421625 PGM2Q96G03 612 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 INTS9Q9NV88 658 aaKnown RBP23.06■■□□□ 1.28
USP48-205ENST00000421625 GGT7Q9UJ14 662 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 A0A1B0GUA9 196 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 MED24O75448 989 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 GSTA1P08263 222 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 VIMP08670 466 aaKnown RBP23.06■■□□□ 1.28
USP48-205ENST00000421625 NPEPPSP55786 919 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 SPDYCQ5MJ68 293 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 GLYCTKQ8IVS8 523 aa23.06■■□□□ 1.28
USP48-205ENST00000421625 RTFDC1Q9BY42 306 aaPredicted RBP23.06■■□□□ 1.28
USP48-205ENST00000421625 RGS16O15492 202 aaPredicted RBP23.05■■□□□ 1.28
USP48-205ENST00000421625 TRPM8Q7Z2W7 1104 aa23.05■■□□□ 1.28
USP48-205ENST00000421625 AMIGO3Q86WK7 504 aa23.05■■□□□ 1.28
USP48-205ENST00000421625 SAMD15Q9P1V8 674 aa23.05■■□□□ 1.28
USP48-205ENST00000421625 RFC4P35249 363 aa23.05■■□□□ 1.28
USP48-205ENST00000421625 BTDP43251 543 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms