RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 TRPV2Q9Y5S1 764 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 STK24Q9Y6E0 443 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 COL4A6Q14031 1691 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 RALGAPA2Q2PPJ7 1873 aa20.85■□□□□ 0.93
PTCD3-204ENST00000418628 SZT2Q5T011 3432 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 GPR32O75388 356 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 BRD1O95696 1058 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 DDIT3P35638 169 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 RARRES1P49788 294 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 DRP2Q13474 957 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 EFCAB12Q6NXP0 572 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 CNKSR3Q6P9H4 555 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 LRRC71Q8N4P6 559 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 XPNPEP1Q9NQW7 623 aa20.84■□□□□ 0.93
PTCD3-204ENST00000418628 CXXC1Q9P0U4 656 aaPredicted RBP20.84■□□□□ 0.93
PTCD3-204ENST00000418628 VWA3AA6NCI4 1184 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 BAIAP3O94812 1187 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 FGBP02675 491 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 RFC5P40937 340 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 GRIN1Q05586 938 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 LPIN1Q14693 890 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 IER5Q5VY09 327 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 OTUD6AQ7L8S5 288 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 SNX29Q8TEQ0 813 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 CEP170P1Q96L14 293 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 RNPC3Q96LT9 517 aaKnown RBP20.83■□□□□ 0.93
PTCD3-204ENST00000418628 AK8Q96MA6 479 aa20.83■□□□□ 0.93
PTCD3-204ENST00000418628 CELF4Q9BZC1 486 aaKnown RBP20.83■□□□□ 0.93
PTCD3-204ENST00000418628 FBXO2Q9UK22 296 aaPredicted RBP20.83■□□□□ 0.93
PTCD3-204ENST00000418628 GAS2O43903 313 aaKnown RBP20.82■□□□□ 0.92
PTCD3-204ENST00000418628 CCT6AP40227 531 aaKnown RBP20.82■□□□□ 0.92
PTCD3-204ENST00000418628 TMEM62Q0P6H9 643 aa20.82■□□□□ 0.92
PTCD3-204ENST00000418628 EMC2Q15006 297 aa20.82■□□□□ 0.92
PTCD3-204ENST00000418628 XKR9Q5GH70 373 aa20.82■□□□□ 0.92
PTCD3-204ENST00000418628 TSHZ1Q6ZSZ6 1077 aa20.82■□□□□ 0.92
PTCD3-204ENST00000418628 ZNF710Q8N1W2 664 aa20.82■□□□□ 0.92
PTCD3-204ENST00000418628 METTL13Q8N6R0 699 aa20.82■□□□□ 0.92
PTCD3-204ENST00000418628 PIGOQ8TEQ8 1089 aa20.82■□□□□ 0.92
PTCD3-204ENST00000418628 TMEM40Q8WWA1 233 aa20.82■□□□□ 0.92
PTCD3-204ENST00000418628 JPH2Q9BR39 696 aaPredicted RBP20.82■□□□□ 0.92
PTCD3-204ENST00000418628 ADAMTS10Q9H324 1103 aa20.82■□□□□ 0.92
PTCD3-204ENST00000418628 SLC26A4O43511 780 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 VTNP04004 478 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 TMOD1P28289 359 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 CDC25AP30304 524 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 GPC3P51654 580 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 SLC39A14Q15043 492 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 OTOP2Q7RTS6 562 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 EXOC8Q8IYI6 725 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 DBF4BQ8NFT6 615 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 NACC1Q96RE7 527 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 MAP7D2Q96T17 732 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 AGO3Q9H9G7 860 aaKnown RBP20.81■□□□□ 0.92
PTCD3-204ENST00000418628 CDHR5Q9HBB8 845 aa20.81■□□□□ 0.92
PTCD3-204ENST00000418628 CHD9Q3L8U1 2897 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 SOX1O00570 391 aaPredicted RBP20.8■□□□□ 0.92
PTCD3-204ENST00000418628 DGAT1O75907 488 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 GHRP10912 638 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 ACTN1P12814 892 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 LONP1P36776 959 aaKnown RBP20.8■□□□□ 0.92
PTCD3-204ENST00000418628 POLGP54098 1239 aaPredicted RBP20.8■□□□□ 0.92
PTCD3-204ENST00000418628 TMEM119Q4V9L6 283 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 KRT79Q5XKE5 535 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 KCTD17Q8N5Z5 321 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 USP38Q8NB14 1042 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 LINC00301Q8NCQ3 95 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 SLC7A3Q8WY07 619 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 APBB2Q92870 758 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 PNMA5Q96PV4 448 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 IFIH1Q9BYX4 1025 aaKnown RBP20.8■□□□□ 0.92
PTCD3-204ENST00000418628 SUGCTQ9HAC7 445 aa20.8■□□□□ 0.92
PTCD3-204ENST00000418628 SRPRBQ9Y5M8 271 aaKnown RBP20.8■□□□□ 0.92
PTCD3-204ENST00000418628 ATG2AQ2TAZ0 1938 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 ABHD14A-ACY1A0A1B0GW23 586 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 M0QZ92 97 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 YEATS4O95619 227 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 CRYBB1P53674 252 aaPredicted RBP20.79■□□□□ 0.92
PTCD3-204ENST00000418628 WDR5P61964 334 aaKnown RBP20.79■□□□□ 0.92
PTCD3-204ENST00000418628 GRB10Q13322 594 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 KIZQ2M2Z5 673 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 KCNK18Q7Z418 384 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 SEPT8Q92599 483 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 MTRQ99707 1265 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 MTIF3Q9H2K0 278 aaKnown RBP20.79■□□□□ 0.92
PTCD3-204ENST00000418628 DDX19AQ9NUU7 478 aaKnown RBP20.79■□□□□ 0.92
PTCD3-204ENST00000418628 KIAA1024Q9UPX6 916 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 AKT3Q9Y243 479 aa20.79■□□□□ 0.92
PTCD3-204ENST00000418628 TRIP11Q15643 1979 aa20.78■□□□□ 0.92
PTCD3-204ENST00000418628 A0A087WWV3 80 aa20.78■□□□□ 0.92
PTCD3-204ENST00000418628 EFCAB14O75071 495 aa20.78■□□□□ 0.92
PTCD3-204ENST00000418628 FXR1P51114 621 aaKnown RBP eCLIP20.78■□□□□ 0.92
PTCD3-204ENST00000418628 NLRP11P59045 1033 aaKnown RBP20.78■□□□□ 0.92
PTCD3-204ENST00000418628 FOXD4L5Q5VV16 416 aaPredicted RBP20.78■□□□□ 0.92
PTCD3-204ENST00000418628 ATL3Q6DD88 541 aa20.78■□□□□ 0.92
PTCD3-204ENST00000418628 FAM109BQ6ICB4 259 aaPredicted RBP20.78■□□□□ 0.92
PTCD3-204ENST00000418628 FAM43BQ6ZT52 329 aaPredicted RBP20.78■□□□□ 0.92
PTCD3-204ENST00000418628 ZNF410Q86VK4 478 aa20.78■□□□□ 0.92
PTCD3-204ENST00000418628 LRRC15Q8TF66 581 aa20.78■□□□□ 0.92
PTCD3-204ENST00000418628 FOXD4L4Q8WXT5 416 aaPredicted RBP20.78■□□□□ 0.92
PTCD3-204ENST00000418628 ZNF396Q96N95 335 aaPredicted RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms