RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 DTX3Q8N9I9 347 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 C1orf162Q8NEQ5 155 aaPredicted RBP6.13□□□□□ -1.43
VPS54-204ENST00000416400 CALML6Q8TD86 181 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 CAMKK2Q96RR4 588 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 SYT3Q9BQG1 590 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 PCGF6Q9BYE7 350 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 SLC13A1Q9BZW2 595 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 ZDHHC5Q9C0B5 715 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 MS4A5Q9H3V2 200 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 L2HGDHQ9H9P8 463 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 TOPORSQ9NS56 1045 aaPredicted RBP6.13□□□□□ -1.43
VPS54-204ENST00000416400 RBPJLQ9UBG7 517 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 LUC7L2Q9Y383 392 aaKnown RBP6.13□□□□□ -1.43
VPS54-204ENST00000416400 ASB1Q9Y576 335 aa6.13□□□□□ -1.43
VPS54-204ENST00000416400 PRAMEF22A3QJZ6 481 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 GOLGA8AA7E2F4 631 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 GOLGA8BA8MQT2 603 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 PRC1O43663 620 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 ABLIM3O94929 683 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 CT47B1P0C2W7 299 aaPredicted RBP6.12□□□□□ -1.43
VPS54-204ENST00000416400 RPL13P26373 211 aaKnown RBP6.12□□□□□ -1.43
VPS54-204ENST00000416400 AOAHP28039 575 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 HTRA3P83110 453 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 ADAM9Q13443 819 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 EPHA7Q15375 998 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 PGM2L1Q6PCE3 622 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 TRMT10BQ6PF06 316 aaKnown RBP6.12□□□□□ -1.43
VPS54-204ENST00000416400 FRMD7Q6ZUT3 714 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 PROSER1Q86XN7 944 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 AMOTL1Q8IY63 956 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 ASB15Q8WXK1 588 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 INCENPQ9NQS7 918 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 MKS1Q9NXB0 559 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 USP36Q9P275 1121 aaKnown RBP6.12□□□□□ -1.43
VPS54-204ENST00000416400 IP6K2Q9UHH9 426 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 ZFP69BQ9UJL9 534 aa6.12□□□□□ -1.43
VPS54-204ENST00000416400 FZD9O00144 591 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 KIF3BO15066 747 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 CYP1A1P04798 512 aaPredicted RBP6.11□□□□□ -1.43
VPS54-204ENST00000416400 ZSCAN20P17040 1043 aaPredicted RBP6.11□□□□□ -1.43
VPS54-204ENST00000416400 ATF3P18847 181 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 CFPP27918 469 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 RECQLP46063 649 aaPredicted RBP6.11□□□□□ -1.43
VPS54-204ENST00000416400 KRT85P78386 507 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 ADCY1Q08828 1119 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 VMACQ2NL98 169 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 CATSPEREQ5SY80 951 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 CMIPQ8IY22 773 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 CCDC146Q8IYE0 955 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 LINC01356Q8N9X3 169 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 ZNF526Q8TF50 670 aaPredicted RBP6.11□□□□□ -1.43
VPS54-204ENST00000416400 LMBR1Q8WVP7 490 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 JPH3Q8WXH2 748 aaPredicted RBP6.11□□□□□ -1.43
VPS54-204ENST00000416400 RTF1Q92541 710 aaKnown RBP6.11□□□□□ -1.43
VPS54-204ENST00000416400 FAXDC2Q96IV6 333 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 C16orf92Q96LL3 132 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 ACAP3Q96P50 834 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 RHOBTB2Q9BYZ6 727 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 GOLGA2P5Q9HBQ8 144 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 UCKL1Q9NWZ5 548 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 GALNT8Q9NY28 637 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 GABBR1Q9UBS5 961 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 FTSJ1Q9UET6 329 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 MSRAQ9UJ68 235 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 MRFAP1Q9Y605 127 aa6.11□□□□□ -1.43
VPS54-204ENST00000416400 CCDC194A0A1B0GVG4 234 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 LCHNA4D1U4 455 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 TRIM75PA6NK02 468 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 DDX3XO00571 662 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS54-204ENST00000416400 XPOTO43592 962 aaKnown RBP6.1□□□□□ -1.43
VPS54-204ENST00000416400 RFPL1O75677 317 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 CHGBP05060 677 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 ZSCAN22P10073 491 aaPredicted RBP6.1□□□□□ -1.43
VPS54-204ENST00000416400 RBP3P10745 1247 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 IL13P35225 146 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 PCBP2Q15366 365 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS54-204ENST00000416400 WDR72Q3MJ13 1102 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 TMEM240Q5SV17 173 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 PHF19Q5T6S3 580 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 FAM102BQ5T8I3 360 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 NXNQ6DKJ4 435 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 TIGD7Q6NT04 549 aaPredicted RBP6.1□□□□□ -1.43
VPS54-204ENST00000416400 TCEAL8Q8IYN2 117 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 CARFQ8N187 725 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 STPG3Q8N7X2 389 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 C7orf31Q8N865 590 aa6.1□□□□□ -1.43
VPS54-204ENST00000416400 TACO1Q9BSH4 297 aaKnown RBP6.1□□□□□ -1.43
VPS54-204ENST00000416400 SPATA6Q9NWH7 488 aaPredicted RBP6.1□□□□□ -1.43
VPS54-204ENST00000416400 NOB1Q9ULX3 412 aaKnown RBP6.1□□□□□ -1.43
VPS54-204ENST00000416400 UBA6A0AVT1 1052 aaPredicted RBP6.09□□□□□ -1.43
VPS54-204ENST00000416400 SH3D21A4FU49 640 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 RASSF10A6NK89 507 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 H0Y858 1186 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 GOLGA6L22H0YM25 854 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 FFAR3O14843 346 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 MAFGO15525 162 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 H2AFYO75367 372 aaKnown RBP6.09□□□□□ -1.43
VPS54-204ENST00000416400 MC4RP32245 332 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 GPR3P46089 330 aa6.09□□□□□ -1.43
VPS54-204ENST00000416400 MLC1Q15049 377 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms