RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 FAXDC2Q96IV6 333 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 POFUT1Q9H488 388 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 PCIF1Q9H4Z3 704 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 ATP13A2Q9NQ11 1180 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 DNAJC28Q9NX36 388 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 TMX2Q9Y320 296 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 SNCAIPQ9Y6H5 919 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 CNTNAP1P78357 1384 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 SMG6Q86US8 1419 aaKnown RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 DDX3XO00571 662 aaKnown RBP eCLIP3.08□□□□□ -1.92
MCF2-204ENST00000414978 LTFP02788 710 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 NTF4P34130 210 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 CTCFP49711 727 aaPredicted RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 RENBPP51606 427 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 CDK17Q00537 523 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 KIF23Q02241 960 aaPredicted RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 DUSP27Q5VZP5 1158 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 INTS3Q68E01 1043 aaKnown RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 CFAP161Q6P656 301 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 GET4Q7L5D6 327 aaPredicted RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 ZNF354CQ86Y25 554 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 FLAD1Q8NFF5 587 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 TTC14Q96N46 770 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 NAP1L5Q96NT1 182 aaPredicted RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 CRB3Q9BUF7 120 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 CDADC1Q9BWV3 514 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 MRPL4Q9BYD3 311 aaKnown RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 PDP2Q9P2J9 529 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 PHTF1Q9UMS5 762 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 RGPD2P0DJD1 1756 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 E2F8A0AVK6 867 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 KDM1AO60341 852 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 HRGP04196 525 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 ZBTB48P10074 688 aaPredicted RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 SNRPBP14678 240 aaKnown RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 RRM1P23921 792 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 CD68P34810 354 aaPredicted RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 BIRC3Q13489 604 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 PDCD1Q15116 288 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 SHISA2Q6UWI4 295 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 TTLL7Q6ZT98 887 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 SLC41A1Q8IVJ1 513 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 TRIM59Q8IWR1 403 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 SMYD4Q8IYR2 804 aaPredicted RBP3.08□□□□□ -1.92
MCF2-204ENST00000414978 FBLIM1Q8WUP2 373 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 SLC5A5Q92911 643 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 GCC1Q96CN9 775 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 ALG1Q9BT22 464 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 CD244Q9BZW8 370 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 EPN3Q9H201 632 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 RXFP1Q9HBX9 757 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 PRDM11Q9NQV5 511 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 MAN1C1Q9NR34 630 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 NDFIP2Q9NV92 336 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 DGKBQ9Y6T7 804 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 WDR17Q8IZU2 1322 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 PITPNM2Q9BZ72 1349 aa3.08□□□□□ -1.92
MCF2-204ENST00000414978 LAMB4A4D0S4 1761 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 TMPRSS2O15393 492 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 PRAMEF1O95521 474 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 NFICP08651 508 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 NAT2P11245 290 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 FGFR1P11362 822 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 ABCB4P21439 1286 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 ALAS2P22557 587 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 FPR2P25090 351 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 TACR1P25103 407 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 SLBPQ14493 270 aaKnown RBP eCLIP3.07□□□□□ -1.92
MCF2-204ENST00000414978 ZNF827Q17R98 1081 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 CT83Q5H943 113 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 TOR2AQ5JU69 321 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 CWF19L1Q69YN2 538 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 CCDC62Q6P9F0 684 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 SLCO4C1Q6ZQN7 724 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 ANKRD23Q86SG2 305 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 CMTR2Q8IYT2 770 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 C7orf61Q8IZ16 206 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 MIER2Q8N344 545 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 DTWD2Q8NBA8 298 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 SIMC1Q8NDZ2 872 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 PPM1EQ8WY54 764 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 DIO2Q92813 273 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 PGBD4Q96DM1 585 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 TEKT5Q96M29 485 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 AIFM3Q96NN9 605 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 GMPR2Q9P2T1 348 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 SERPINB13Q9UIV8 391 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 NOC2LQ9Y3T9 749 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 SNX13Q9Y5W8 968 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 SLC35F4A4IF30 521 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 SCDO00767 359 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 TCERG1O14776 1098 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 CNOT4O95628 575 aaKnown RBP3.07□□□□□ -1.92
MCF2-204ENST00000414978 GLB1P16278 677 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 ITIH2P19823 946 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 KIF11P52732 1056 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 IRF9Q00978 393 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 DSG1Q02413 1049 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 CLEC16AQ2KHT3 1053 aa3.07□□□□□ -1.92
MCF2-204ENST00000414978 TMEM177Q53S58 311 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms